Gene detail

Detail information of GWHGAAZE018537

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_007201342.1	1.71817E-86	hypothetical protein PRUPE_ppa011990mg [Prunus persica]
Swissprot	tr\|Q9ZQE6\|CML1_ARATH	2E-70	Calmodulin-like protein 1
trEMBL	tr\|M5VNS5\|M5VNS5_PRUPE	6E-87	Uncharacterized protein {ECO:0000313\|EMBL:EMJ02541.1}
TAIR10	AT2G15680.1	3E-42	Calcium-binding EF-hand family protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000005	gene	20904173	20904730	-
GWHAAZE00000005	mRNA	20904173	20904730	-
GWHAAZE00000005	exon	20904173	20904730	-
GWHAAZE00000005	CDS	20904173	20904730	-

Transcript Sequence
>GWHTAAZE018559 ATGTCAACTCCACGTTTCCTCGACTTGCAGTACAACATTTCCAAGAGGAAGTACTTGAAGAAACCATCGCGCATGTTTTCTTCAAGCAGCCGACAAAGCTCAGGCTTATCGCAAGTATTCCAACCAACCGTCGAAGAAATGAAGAAAGTGTTTGACAAATTTGACAAAGACAAAGACGGGAAGATATCGCAGGTGGAGTACAAGGACATACTGAGAGCCCTGGGAAAGGGGAGCACGACCAGGGATGTACAAAAGATATTCGAGGTGGCTGATTTGGACGGGGATGGGTTCATTGACTTTAAAGAATTTATGGAAGTAAACAGGAGAGGAGGCGGGGTGAAGACTGTGGACATACAGAGCGCATTTAGGATCTTTGATTTGGATGGAGACGGGAAAATAACGGTGGATGAAGTGTTCGAGTTGTTGAAGAGGCTAGGGGAGAGGTGCAGCTTACAAGAGTGTAGGAAAATGGTGAGAGCTGTGGATTCGAACCAGGACGGTGTGATTGATATGGATGAGTTTATGACTATGATGACCAAGTCCTTGATGCTTGGCTGA

Network for GWHGAAZE018537

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF13499.7	EF-hand_7	45	105	2.80E-12
PF13499.7	EF-hand_7	117	178	1.20E-13

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K13448	CML	Plant-pathogen interaction	map04626

Gene Ontology

GO term	Ontology	Name
GO:0005509	molecular_function	calcium ion binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	33.657
	SRR3591706	second leaf	29.238
	SRR3591707	mature leaf	48.956
	SRR3591708	Shoot apex	9.628
	SRR3591709	Stem	42.096
	SRR3591710	White floral bud	44.511
	SRR3591711	White flower	54.090
	SRR3591712	Green floral bud	41.265
	SRR3591713	Yellow flower	26.395
SRP173429	SRR8316895	Juvenile bud stage	8.308
	SRR8316896	Juvenile bud stage	8.920
	SRR8316897	Juvenile bud stage	6.378
	SRR8316894	Third green stage	6.833
	SRR8316900	Third green stage	30.497
	SRR8316901	Third green stage	26.980
	SRR8316898	Complete white stage	15.150
	SRR8316899	Complete white stage	55.870
	SRR8316903	Complete white stage	50.665
	SRR8316902	Silver flowering stage	12.915
	SRR8316904	Silver flowering stage	16.853
	SRR8316905	Silver flowering stage	8.665
	SRR8316906	Gold flowering stage	26.529
	SRR8316907	Gold flowering stage	15.976
	SRR8316908	Gold flowering stage	24.036
SRP132670	SRR6706286	Control	62.324
	SRR6706287	Light intensity 50%	49.820
	SRR6706288	Light intensity 20%	38.940
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	54.416
	CNS0095593	Slightly white alabastrum(diploid) 2	83.851
	CNS0095594	Slightly white alabastrum(diploid) 3	53.097
	CNS0095595	Whole white alabastrum(diploid) 2	63.946
	CNS0095596	Whole white alabastrum(diploid) 3	33.066
	CNS0095597	Whole white alabastrum(diploid) 4	49.624
	CNS0095598	Silvery flower (diploied) 1	58.969
	CNS0095599	Silvery flower (diploied) 2	31.691
	CNS0095600	Silvery flower (diploied) 3	14.057
	CNS0095601	Golden flower (diploid) 1	30.488
	CNS0095602	Golden flower (diploid) 2	25.864
	CNS0095603	Golden flower (diploid) 3	26.371
	CNS0095604	Slightly white alabastrum(tetraploid) 1	54.769
	CNS0095605	Slightly white alabastrum(tetraploid) 2	66.402
	CNS0095606	Slightly white alabastrum(tetraploid) 3	54.861
	CNS0095607	Whole white alabastrum(tetraploid) 1	71.947
	CNS0095608	Whole white alabastrum(tetraploid) 2	55.723
	CNS0095609	Whole white alabastrum(tetraploid) 3	20.751
	CNS0095610	Silvery flower (tetraploid) 1	31.289
	CNS0095611	Silvery flower (tetraploid) 2	8.407
	CNS0095612	Silvery flower (tetraploid) 3	10.193
	CNS0095613	Golden flower (tetraploid) 1	73.323
	CNS0095614	Golden flower (tetraploid) 2	31.749
	CNS0095615	Golden flower (tetraploid) 3	15.600
CRA001975	CRR073297	Stem 1	12.840
	CRR073298	Stem 2	11.898
	CRR073299	Stem 3	16.695
	CRR073300	Leaf 1	44.094
	CRR073301	Leaf 2	55.509
	CRR073302	Leaf 3	38.900
	CRR073303	Juvenile bud 1	60.462
	CRR073304	Juvenile bud 2	24.714
	CRR073305	Juvenile bud 3	69.862
	CRR073306	Third green 1	23.485
	CRR073307	Third green 2	31.889
	CRR073308	Third green 3	24.418
	CRR073309	Second white 1	10.795
	CRR073310	Second white 2	10.530
	CRR073311	Second white 3	8.363
	CRR073312	Silver flowering 1	15.131
	CRR073313	Silver flowering 2	6.421
	CRR073314	Silver flowering 3	7.347
	CRR073315	Gold flowering 1	57.080
	CRR073316	Gold flowering 2	45.555
	CRR073317	Gold flowering 3	57.333
	CRR073318	Tawny withering 1	44.486
	CRR073319	Tawny withering 2	62.184
	CRR073320	Tawny withering 3	63.563