Detail information of GWHGAAZE018536


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrXP_002282100.20PREDICTED: protein CHROMATIN REMODELING 25 [Vitis vinifera]
Swissprottr|Q0PCS3|CHR25_ARATH0Protein CHROMATIN REMODELING 25
trEMBLtr|V4S769|V4S769_9ROSI0Uncharacterized protein {ECO:0000313|EMBL:ESR36272.1}
TAIR10AT3G19210.10homolog of RAD54

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000005gene2088645720903416-
GWHAAZE00000005mRNA2088645720903416-
GWHAAZE00000005exon2090333020903416-
GWHAAZE00000005exon2089947620899518-
GWHAAZE00000005exon2089893820899373-
GWHAAZE00000005exon2089876520898851-
GWHAAZE00000005exon2089841120898651-
GWHAAZE00000005exon2089822020898345-
GWHAAZE00000005exon2089806520898121-
GWHAAZE00000005exon2089787620897962-
GWHAAZE00000005exon2089764820897743-
GWHAAZE00000005exon2089748320897533-
GWHAAZE00000005exon2089606820896154-
GWHAAZE00000005exon2089539320895484-
GWHAAZE00000005exon2089517320895305-
GWHAAZE00000005exon2089119220891311-
GWHAAZE00000005exon2089098920891102-
GWHAAZE00000005exon2089078720890870-
GWHAAZE00000005exon2089061720890691-
GWHAAZE00000005exon2089048120890539-
GWHAAZE00000005exon2088818720888385-
GWHAAZE00000005exon2088794220888097-
GWHAAZE00000005exon2088645720886822-
GWHAAZE00000005CDS2090333020903416-
GWHAAZE00000005CDS2089947620899518-
GWHAAZE00000005CDS2089893820899373-
GWHAAZE00000005CDS2089876520898851-
GWHAAZE00000005CDS2089841120898651-
GWHAAZE00000005CDS2089822020898345-
GWHAAZE00000005CDS2089806520898121-
GWHAAZE00000005CDS2089787620897962-
GWHAAZE00000005CDS2089764820897743-
GWHAAZE00000005CDS2089748320897533-
GWHAAZE00000005CDS2089606820896154-
GWHAAZE00000005CDS2089539320895484-
GWHAAZE00000005CDS2089517320895305-
GWHAAZE00000005CDS2089119220891311-
GWHAAZE00000005CDS2089098920891102-
GWHAAZE00000005CDS2089078720890870-
GWHAAZE00000005CDS2089061720890691-
GWHAAZE00000005CDS2089048120890539-
GWHAAZE00000005CDS2088818720888385-
GWHAAZE00000005CDS2088794220888097-
GWHAAZE00000005CDS2088645720886822-
Transcript Sequence

Network for GWHGAAZE018536

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF00176.24SNF2_N2034631.50E-47
PF00271.32Helicase_C5196271.40E-13
Protein Sequence

Gene family

Gene familysubfamily
Transcription Factors FamilySNF2

KEGG pathway

KO Enzyme pathway mapID
K10875RAD54L, RAD54 Homologous recombination map03440

Gene Ontology

GO term OntologyName
GO:0005524molecular_functionATP binding

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf9.255
SRR3591706second leaf5.549
SRR3591707mature leaf4.187
SRR3591708Shoot apex21.812
SRR3591709Stem6.302
SRR3591710White floral bud1.579
SRR3591711White flower1.395
SRR3591712Green floral bud2.124
SRR3591713Yellow flower0.195
SRP173429 SRR8316895Juvenile bud stage 5.187
SRR8316896Juvenile bud stage 7.225
SRR8316897Juvenile bud stage 3.117
SRR8316894Third green stage 2.596
SRR8316900Third green stage 4.956
SRR8316901Third green stage 4.331
SRR8316898Complete white stage 0.365
SRR8316899Complete white stage 4.313
SRR8316903Complete white stage 1.578
SRR8316902Silver flowering stage0.440
SRR8316904Silver flowering stage0.509
SRR8316905Silver flowering stage0.203
SRR8316906Gold flowering stage 0.475
SRR8316907Gold flowering stage 0.672
SRR8316908Gold flowering stage 1.692
SRP132670SRR6706286Control3.282
SRR6706287Light intensity 50%3.407
SRR6706288Light intensity 20%3.196
CNP0000432CNS0095592Slightly white alabastrum(diploid) 13.114
CNS0095593Slightly white alabastrum(diploid) 22.230
CNS0095594Slightly white alabastrum(diploid) 32.184
CNS0095595Whole white alabastrum(diploid) 21.707
CNS0095596Whole white alabastrum(diploid) 31.803
CNS0095597Whole white alabastrum(diploid) 40.761
CNS0095598Silvery flower (diploied) 12.632
CNS0095599Silvery flower (diploied) 23.274
CNS0095600Silvery flower (diploied) 31.758
CNS0095601Golden flower (diploid) 11.714
CNS0095602Golden flower (diploid) 21.242
CNS0095603Golden flower (diploid) 31.807
CNS0095604Slightly white alabastrum(tetraploid) 12.630
CNS0095605Slightly white alabastrum(tetraploid) 22.273
CNS0095606Slightly white alabastrum(tetraploid) 34.185
CNS0095607Whole white alabastrum(tetraploid) 10.694
CNS0095608Whole white alabastrum(tetraploid) 20.377
CNS0095609Whole white alabastrum(tetraploid) 31.629
CNS0095610Silvery flower (tetraploid) 10.853
CNS0095611Silvery flower (tetraploid) 20.837
CNS0095612Silvery flower (tetraploid) 31.639
CNS0095613Golden flower (tetraploid) 10.137
CNS0095614Golden flower (tetraploid) 20.458
CNS0095615Golden flower (tetraploid) 30.407
CRA001975CRR073297Stem 15.237
CRR073298Stem 24.437
CRR073299Stem 34.429
CRR073300Leaf 12.415
CRR073301Leaf 22.358
CRR073302Leaf 31.914
CRR073303Juvenile bud 11.202
CRR073304Juvenile bud 20.876
CRR073305Juvenile bud 31.668
CRR073306Third green 10.011
CRR073307Third green 20.320
CRR073308Third green 30.159
CRR073309Second white 10.002
CRR073310Second white 20.047
CRR073311Second white 30.065
CRR073312Silver flowering 10.148
CRR073313Silver flowering 20.035
CRR073314Silver flowering 30.175
CRR073315Gold flowering 12.469
CRR073316Gold flowering 25.265
CRR073317Gold flowering 31.093
CRR073318Tawny withering 15.187
CRR073319Tawny withering 24.853
CRR073320Tawny withering 34.234