Gene detail

Detail information of GWHGAAZE018523

Functional Annotation

Database	Orthologs	Annotation
Nr	XP_004230803.1	PREDICTED: CDPK-related kinase 5 [Solanum lycopersicum]
Swissprot	tr\|Q9SCS2\|CAMK5_ARATH	CDPK-related kinase 5
trEMBL	tr\|K4B355\|K4B355_SOLLC	Uncharacterized protein {ECO:0000313\|EnsemblPlants:Solyc01g108400.2.1}
TAIR10	AT3G50530.1	CDPK-related kinase

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000005	gene	20684568	20692134	+
GWHAAZE00000005	mRNA	20684568	20692134	+
GWHAAZE00000005	exon	20684568	20685029	+
GWHAAZE00000005	exon	20686115	20686245	+
GWHAAZE00000005	exon	20686684	20686725	+
GWHAAZE00000005	exon	20686843	20686951	+
GWHAAZE00000005	exon	20687349	20687427	+
GWHAAZE00000005	exon	20687527	20687823	+
GWHAAZE00000005	exon	20687913	20688025	+
GWHAAZE00000005	exon	20688617	20688718	+
GWHAAZE00000005	exon	20689514	20689576	+
GWHAAZE00000005	exon	20689679	20689846	+
GWHAAZE00000005	exon	20691997	20692134	+
GWHAAZE00000005	CDS	20684568	20685029	+
GWHAAZE00000005	CDS	20686115	20686245	+
GWHAAZE00000005	CDS	20686684	20686725	+
GWHAAZE00000005	CDS	20686843	20686951	+
GWHAAZE00000005	CDS	20687349	20687427	+
GWHAAZE00000005	CDS	20687527	20687823	+
GWHAAZE00000005	CDS	20687913	20688025	+
GWHAAZE00000005	CDS	20688617	20688718	+
GWHAAZE00000005	CDS	20689514	20689576	+
GWHAAZE00000005	CDS	20689679	20689846	+
GWHAAZE00000005	CDS	20691997	20692134	+

Transcript Sequence
>GWHTAAZE018545 ATGGGAGCCTGCACCTCCAAGCCTCCCAAACCCAACCCCTACGCCACCAAACCCGACACCCCCATCCAAACCGAAACTCCGGTAACTGGAATCAATGACTCCGACGCCGGAAAAAAAACCCCGATCTTCCCTTTCTACACTCCAAGCCCGGCCCGAGGGAAGAAGTCCCCGTCCACGCCGAGGAGGTTCTTCAGGCGGCCGCCATCACCGGCGAAGCATATGAAGGCTGTGCTGGCGAGGCGGCAGGGGACTGTGAAGCCCAACAATGCGGCTGCGGTCGGGGAGGAGAGAGAGGAGATTGCGATGGATAAGAGTTTTGGGTTTTCGAAGGAGCTGAGTAGCAGGTATGAGGTTGGGGAAGAGATAGGGCGAGGGCATTTTGGGTATACTTGTGCTGCTTTCCCCAGAAAAGGTGACCTTAAAGGACAGAAGGTTGCCGTTAAAGTTGTACCCAAGGCCAAGATGACAACAGCTATCGCTGTTGAGGATGTGAGAAGGGAAGTGAAAATATTGCGGGCCTTGTCAGGACAGAGCAATCTTGCACAGTTCTATGATGCTTTTGAGGACCACAATAATGTCTACATAGTGATGGAGTTGTGTGAAGGAGGGGAGCTCCTAGATAGAATTCTTGCAAGGAATGGGAAGTACTCAGAAGATGAGGCAAAGACTGTTTTGGCACAGATATTAAATTTTGTTGCATTTTGTCACCTCCAGGGTGTGGTGCACCGTGATCTGAAACCAGAGAATTTCTTGTTCACCTCCAAGGATGAAAAGTCCCCATTGAAAGCCATAGACTTTGGCTTATCAGATTTTGTAAGACCAGACGAAAAACTTAATGACATTGTTGGAAGTGCGTACTATGTGGCACCTGAAGTTTTACTCAAATCTTACAGCACTGAGGCCGATGTATGGAGTATAGGCGTTATAGCTTATATTCTTTTATGTGGTAGTCGCCCATTTTGGGCCCACACCGAGTCTGGGATATTCCGGGCTGTTCTAAAAGCTGATCCGAGTTTTGATGAAGCACCTTGGCCCGTATTATCTTCAGAGGCAAAGGATTTTGTTAAGCGCCTACTGAATAAAGACCCGAGGAAACGAATATCTGCTGCGCAGGCTCTAAGTCATCCATGGATACGGAATTATAATGAAGTAAAAGTCCCGCTTGATATTCTTATTTTCAGACTCATGAAAGTGTATATGCGATCATCACCTTTGCGTAAGGCTGCTTTAAGGGCTTTGTCTAAAACATTGAATACAGATGATCTCCTCTATCTGAAAGAGCAGTTTGCTCTTTTGAGTAAAAATGGCAGCATAACCTTGGAGAGCATTAGAGTGGCCCTCGCGAAACATGAAACAGATGCAATGAAGGAGTCACGCATCCTTGATTTTCTCCCCTCGCTAAATGCACTTCACTATAGAAGGATGGATTTTGGAGAATTCTGTGCAGCCGCAGTAAGTGTCCATCAGCTGCAGGCACATGATCGATGGGAACAAGATGCTCGTACGGCATATGAAATTTTTGAGAAAGATGGTAACCGGGCTATTGTCATTGAAGAGCTTGCATCGGAACTCGGGCTCGGTCCTTCGGTCTCATTGCATACTGTTCTGAATGACTGGATAAGGCATACAGATGGGAAGTTAAGCTTCCTCGGCTTTGTGAAACTGTTGCATGGCATGTCCACAAGAACCATATCAAAAGCGTAG

Network for GWHGAAZE018523

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00069.26	Pkinase	116	378	2.80E-69

Protein Sequence

Gene family

Gene family	subfamily
Protein Kinases Family	CAMK_CDPK

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0006468	biological_process	protein phosphorylation
GO:0004672	molecular_function	protein kinase activity
GO:0005524	molecular_function	ATP binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	32.787
	SRR3591706	second leaf	7.941
	SRR3591707	mature leaf	3.944
	SRR3591708	Shoot apex	11.148
	SRR3591709	Stem	60.223
	SRR3591710	White floral bud	2.798
	SRR3591711	White flower	2.552
	SRR3591712	Green floral bud	1.798
	SRR3591713	Yellow flower	0.953
SRP173429	SRR8316895	Juvenile bud stage	8.949
	SRR8316896	Juvenile bud stage	10.223
	SRR8316897	Juvenile bud stage	2.918
	SRR8316894	Third green stage	4.376
	SRR8316900	Third green stage	9.935
	SRR8316901	Third green stage	10.462
	SRR8316898	Complete white stage	13.133
	SRR8316899	Complete white stage	14.200
	SRR8316903	Complete white stage	19.508
	SRR8316902	Silver flowering stage	42.025
	SRR8316904	Silver flowering stage	58.038
	SRR8316905	Silver flowering stage	29.833
	SRR8316906	Gold flowering stage	127.550
	SRR8316907	Gold flowering stage	113.405
	SRR8316908	Gold flowering stage	114.615
SRP132670	SRR6706286	Control	9.826
	SRR6706287	Light intensity 50%	9.013
	SRR6706288	Light intensity 20%	8.203
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	9.992
	CNS0095593	Slightly white alabastrum(diploid) 2	7.994
	CNS0095594	Slightly white alabastrum(diploid) 3	8.334
	CNS0095595	Whole white alabastrum(diploid) 2	7.080
	CNS0095596	Whole white alabastrum(diploid) 3	7.480
	CNS0095597	Whole white alabastrum(diploid) 4	6.252
	CNS0095598	Silvery flower (diploied) 1	19.109
	CNS0095599	Silvery flower (diploied) 2	14.870
	CNS0095600	Silvery flower (diploied) 3	59.450
	CNS0095601	Golden flower (diploid) 1	45.981
	CNS0095602	Golden flower (diploid) 2	97.822
	CNS0095603	Golden flower (diploid) 3	93.329
	CNS0095604	Slightly white alabastrum(tetraploid) 1	6.663
	CNS0095605	Slightly white alabastrum(tetraploid) 2	6.668
	CNS0095606	Slightly white alabastrum(tetraploid) 3	2.800
	CNS0095607	Whole white alabastrum(tetraploid) 1	5.699
	CNS0095608	Whole white alabastrum(tetraploid) 2	1.811
	CNS0095609	Whole white alabastrum(tetraploid) 3	3.307
	CNS0095610	Silvery flower (tetraploid) 1	15.301
	CNS0095611	Silvery flower (tetraploid) 2	21.589
	CNS0095612	Silvery flower (tetraploid) 3	6.431
	CNS0095613	Golden flower (tetraploid) 1	53.802
	CNS0095614	Golden flower (tetraploid) 2	28.720
	CNS0095615	Golden flower (tetraploid) 3	90.521
CRA001975	CRR073297	Stem 1	8.041
	CRR073298	Stem 2	6.071
	CRR073299	Stem 3	7.848
	CRR073300	Leaf 1	4.832
	CRR073301	Leaf 2	5.347
	CRR073302	Leaf 3	6.461
	CRR073303	Juvenile bud 1	5.403
	CRR073304	Juvenile bud 2	3.701
	CRR073305	Juvenile bud 3	7.289
	CRR073306	Third green 1	17.400
	CRR073307	Third green 2	12.270
	CRR073308	Third green 3	14.990
	CRR073309	Second white 1	3.867
	CRR073310	Second white 2	6.355
	CRR073311	Second white 3	9.253
	CRR073312	Silver flowering 1	14.764
	CRR073313	Silver flowering 2	7.017
	CRR073314	Silver flowering 3	6.087
	CRR073315	Gold flowering 1	3.452
	CRR073316	Gold flowering 2	5.884
	CRR073317	Gold flowering 3	2.594
	CRR073318	Tawny withering 1	13.310
	CRR073319	Tawny withering 2	7.510
	CRR073320	Tawny withering 3	13.741