Gene detail

Detail information of GWHGAAZE018519

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	CAN81424.1	1.8897E-131	hypothetical protein VITISV_035944 [Vitis vinifera]
Swissprot	tr\|Q9LTH4\|PCLL_ARATH	1E-14	Transcription factor BOA
trEMBL	tr\|A5BS05\|A5BS05_VITVI	7E-132	Putative uncharacterized protein {ECO:0000313\|EMBL:CAN81424.1}
TAIR10	AT1G68670.1	1E-33	myb-like transcription factor family protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000005	gene	20640378	20642161	+
GWHAAZE00000005	mRNA	20640378	20642161	+
GWHAAZE00000005	exon	20640378	20640623	+
GWHAAZE00000005	exon	20640725	20641115	+
GWHAAZE00000005	exon	20641682	20641758	+
GWHAAZE00000005	exon	20641856	20642161	+
GWHAAZE00000005	CDS	20640378	20640623	+
GWHAAZE00000005	CDS	20640725	20641115	+
GWHAAZE00000005	CDS	20641682	20641758	+
GWHAAZE00000005	CDS	20641856	20642161	+

Transcript Sequence
>GWHTAAZE018541 ATTGTCCATTTGAAGGAGGAATTAACGCTGTGTAAGAAACAAAATGTTGAACCTGTATTAGAAGAATTCATTCCATTGAAGAAGAGTTGTGATGTAGATGATGAAAAGGATGAGGTTGTTAAGGAAAAAGACAATAGAGATAAGATGAATTGGATGAGTTCCGTGCAACTCTGGAATAGTGCCGATTGTACAAAAACCGACTCCAACTTAGATCCAAAACAAAATACAGTTACGGAAATTAAAAAGATAACTGAAGAAGAAAATAAACAAGTAATTGATGATCCCTATCAGTCTTGTAATAACAGGATGGGGAGGGCATTTATCCCGTTTAAGGGCTTTTCAGTTCTTCCGGTCGCCCTGAAGAGGAAGGAAGACAAGGAGCACTTACCAGTTCCAGGGCTTTCCCTCCTCAGCCCTGGAATTAAGAATCCTAGACAAGAATTGGGGTCTAATGTTTTGAGTACGAAAAGTAATAGTAGCATAGCAGTTTCATCTTCTAGCTTCGATGGTCAATCAAATTTACGGACTGGGTTGCAGCCACCTCAGCCACAGACGTCTAGGAAACAAAGAAGGTGCTGGTCACCCGAGTTGCATAGACGCTTTGTTAATGCCTTGCAACAACTTGGAGGATCTCAAGCGGCCACTCCTAAGCAAATTAGAGAGCTAATGCAAGTCAATGGTCTCACCAACGATGAAGTGAAGAGTCATTTGCAAAAATACCGGCTTCATACGCGAAGAGTTCCATCTGCAGGATCAACTGCTACAAATCAATCACTTGTCGTATTGGGAGGCTTGTGGATGCCCCAAGATCAATGTGGCGAATCCTCGAAGCAGAGCAGCTCACATTCCGGTTCTCCCCATGGCCCGCTCCATTTGACTGGACCCTCGGGGGGAACTACTTCTACCACAGGAGGTGATAGCATGGAAGACGAAGAAGAAGATGGAAAATCAGAGAGCTACAGCTGGAAAAAATGATGTATAAATAATATAATATATTATATATATACAAATCCACCATGA

Network for GWHGAAZE018519

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00249.32	Myb_DNA-binding	190	241	4.40E-07

Protein Sequence

Gene family

Gene family	subfamily
Transcription Factors Family	GARP-G2-like

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0003677	molecular_function	DNA binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	19.144
	SRR3591706	second leaf	15.943
	SRR3591707	mature leaf	68.549
	SRR3591708	Shoot apex	17.105
	SRR3591709	Stem	22.449
	SRR3591710	White floral bud	27.358
	SRR3591711	White flower	30.681
	SRR3591712	Green floral bud	16.893
	SRR3591713	Yellow flower	24.611
SRP173429	SRR8316895	Juvenile bud stage	6.785
	SRR8316896	Juvenile bud stage	5.235
	SRR8316897	Juvenile bud stage	3.909
	SRR8316894	Third green stage	5.882
	SRR8316900	Third green stage	18.562
	SRR8316901	Third green stage	12.977
	SRR8316898	Complete white stage	12.099
	SRR8316899	Complete white stage	17.073
	SRR8316903	Complete white stage	19.277
	SRR8316902	Silver flowering stage	8.883
	SRR8316904	Silver flowering stage	12.391
	SRR8316905	Silver flowering stage	6.034
	SRR8316906	Gold flowering stage	14.620
	SRR8316907	Gold flowering stage	20.105
	SRR8316908	Gold flowering stage	14.689
SRP132670	SRR6706286	Control	13.452
	SRR6706287	Light intensity 50%	10.939
	SRR6706288	Light intensity 20%	12.373
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	15.742
	CNS0095593	Slightly white alabastrum(diploid) 2	22.346
	CNS0095594	Slightly white alabastrum(diploid) 3	9.991
	CNS0095595	Whole white alabastrum(diploid) 2	14.878
	CNS0095596	Whole white alabastrum(diploid) 3	11.685
	CNS0095597	Whole white alabastrum(diploid) 4	10.486
	CNS0095598	Silvery flower (diploied) 1	58.724
	CNS0095599	Silvery flower (diploied) 2	45.868
	CNS0095600	Silvery flower (diploied) 3	29.828
	CNS0095601	Golden flower (diploid) 1	34.001
	CNS0095602	Golden flower (diploid) 2	31.593
	CNS0095603	Golden flower (diploid) 3	29.635
	CNS0095604	Slightly white alabastrum(tetraploid) 1	12.630
	CNS0095605	Slightly white alabastrum(tetraploid) 2	11.881
	CNS0095606	Slightly white alabastrum(tetraploid) 3	11.545
	CNS0095607	Whole white alabastrum(tetraploid) 1	12.478
	CNS0095608	Whole white alabastrum(tetraploid) 2	11.619
	CNS0095609	Whole white alabastrum(tetraploid) 3	10.798
	CNS0095610	Silvery flower (tetraploid) 1	21.457
	CNS0095611	Silvery flower (tetraploid) 2	22.290
	CNS0095612	Silvery flower (tetraploid) 3	23.072
	CNS0095613	Golden flower (tetraploid) 1	17.290
	CNS0095614	Golden flower (tetraploid) 2	21.905
	CNS0095615	Golden flower (tetraploid) 3	12.953
CRA001975	CRR073297	Stem 1	18.430
	CRR073298	Stem 2	22.904
	CRR073299	Stem 3	19.158
	CRR073300	Leaf 1	20.366
	CRR073301	Leaf 2	31.448
	CRR073302	Leaf 3	18.829
	CRR073303	Juvenile bud 1	27.590
	CRR073304	Juvenile bud 2	13.584
	CRR073305	Juvenile bud 3	24.246
	CRR073306	Third green 1	28.763
	CRR073307	Third green 2	23.612
	CRR073308	Third green 3	25.750
	CRR073309	Second white 1	8.274
	CRR073310	Second white 2	10.706
	CRR073311	Second white 3	6.185
	CRR073312	Silver flowering 1	8.416
	CRR073313	Silver flowering 2	8.649
	CRR073314	Silver flowering 3	9.791
	CRR073315	Gold flowering 1	19.124
	CRR073316	Gold flowering 2	15.760
	CRR073317	Gold flowering 3	4.217
	CRR073318	Tawny withering 1	41.124
	CRR073319	Tawny withering 2	39.233
	CRR073320	Tawny withering 3	32.152