Gene detail

Detail information of GWHGAAZE018507

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_010647802.1	8.08518E-24	PREDICTED: B3 domain-containing protein Os01g0723500-like [Vitis vinifera]
Swissprot	tr\|Q8S2E6\|Y1235_ORYSJ	9E-16	B3 domain-containing protein Os01g0723500
trEMBL	tr\|V4SBX5\|V4SBX5_9ROSI	2E-23	Uncharacterized protein {ECO:0000313\|EMBL:ESR36325.1}
TAIR10	AT3G18990.1	7E-12	AP2/B3-like transcriptional factor family protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000005	gene	20494468	20496073	-
GWHAAZE00000005	mRNA	20494468	20496073	-
GWHAAZE00000005	exon	20495713	20496073	-
GWHAAZE00000005	exon	20495347	20495445	-
GWHAAZE00000005	exon	20495029	20495172	-
GWHAAZE00000005	exon	20494822	20494942	-
GWHAAZE00000005	exon	20494468	20494528	-
GWHAAZE00000005	CDS	20495713	20496073	-
GWHAAZE00000005	CDS	20495347	20495445	-
GWHAAZE00000005	CDS	20495029	20495172	-
GWHAAZE00000005	CDS	20494851	20494942	-
GWHAAZE00000005	three_prime_UTR	20494822	20494850	-
GWHAAZE00000005	three_prime_UTR	20494468	20494528	-

Transcript Sequence
>GWHTAAZE018529 ATGAAGCATATAAAGAAAGAAGAATCCGATACAGCAACTCTAAAGGGTCCTTGTGGTGGCCATTGGAGAGTAAAATTAGGTCAGAAGGAAAACGGCACATTTCTACAGGATGGTTGGCAGGAATTTGTAAGAGACAACTCTATAAGGGAGGCCGACTTTTTACTCTTCACGTATGAAGGAAATCTGTGCTTCAGTGCTCAAATTTTCAATAAGAGTGGATTGGAGAGAATCAATACCTCAAAACAGCTAGAGGCCACCTCTTTTGGCATGAAAAAGAAACAAGCGGGCAGCCCAAGAAAAGGCAGTATTGATCATCCCCTGAAACCTCAGCAGTCAAATAATGCCAGCAGAAATGGAACAGGTGATGGAATACATGAAGAAGATAAACCCTCAAATGGAAAAAGGAAACGCGGAAGACCAAGAAAAGCTATTGTAGCATCCTTACCTCCTCAGCAATCAGATTTAAACTACGTTTTAGATAGGAAAGCTGATGGAAAACAACAATCCGAAGCCTCAAATGGAAAAGGCAACCGTGGCAGACCAAGAAAATGCAATGTTGCTCCCCTAAACCTCCAACCACCAGAGTCCAGCAGAGATGATCCAGGTAGCATAAAACATCAAGAAGCTGGACCTTCTAGTGGAAAAAGGAAACGGGGGAGACCAAGAAAAGAGCAGGTCCCTCCGGTGAAACTCTGAGTTGGAACCAAGCGGACATAGTTCATGAGGTACCGAGCAGATAGAAGAGAGGGCTCGGACCATTTGGGAACCAAATTCACAGCCCAAGGG

Network for GWHGAAZE018507

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF02362.22	B3	4	71	4.70E-13
PF02178.20	AT_hook	134	145	0.0047
PF02178.20	AT_hook	175	183	0.62
PF02178.20	AT_hook	215	225	0.086

Protein Sequence

Gene family

Gene family	subfamily
Transcription Factors Family	B3

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0003677	molecular_function	DNA binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	0.000
	SRR3591706	second leaf	0.000
	SRR3591707	mature leaf	0.000
	SRR3591708	Shoot apex	0.275
	SRR3591709	Stem	0.000
	SRR3591710	White floral bud	0.419
	SRR3591711	White flower	0.359
	SRR3591712	Green floral bud	2.776
	SRR3591713	Yellow flower	0.203
SRP173429	SRR8316895	Juvenile bud stage	0.731
	SRR8316896	Juvenile bud stage	0.729
	SRR8316897	Juvenile bud stage	0.280
	SRR8316894	Third green stage	1.358
	SRR8316900	Third green stage	3.132
	SRR8316901	Third green stage	2.078
	SRR8316898	Complete white stage	0.584
	SRR8316899	Complete white stage	1.635
	SRR8316903	Complete white stage	1.184
	SRR8316902	Silver flowering stage	1.014
	SRR8316904	Silver flowering stage	0.695
	SRR8316905	Silver flowering stage	0.414
	SRR8316906	Gold flowering stage	0.226
	SRR8316907	Gold flowering stage	0.537
	SRR8316908	Gold flowering stage	0.646
SRP132670	SRR6706286	Control	3.866
	SRR6706287	Light intensity 50%	3.063
	SRR6706288	Light intensity 20%	3.505
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	0.655
	CNS0095593	Slightly white alabastrum(diploid) 2	0.053
	CNS0095594	Slightly white alabastrum(diploid) 3	1.608
	CNS0095595	Whole white alabastrum(diploid) 2	0.343
	CNS0095596	Whole white alabastrum(diploid) 3	0.348
	CNS0095597	Whole white alabastrum(diploid) 4	0.787
	CNS0095598	Silvery flower (diploied) 1	0.474
	CNS0095599	Silvery flower (diploied) 2	0.000
	CNS0095600	Silvery flower (diploied) 3	0.886
	CNS0095601	Golden flower (diploid) 1	0.513
	CNS0095602	Golden flower (diploid) 2	0.118
	CNS0095603	Golden flower (diploid) 3	0.378
	CNS0095604	Slightly white alabastrum(tetraploid) 1	0.412
	CNS0095605	Slightly white alabastrum(tetraploid) 2	0.588
	CNS0095606	Slightly white alabastrum(tetraploid) 3	1.199
	CNS0095607	Whole white alabastrum(tetraploid) 1	0.458
	CNS0095608	Whole white alabastrum(tetraploid) 2	0.255
	CNS0095609	Whole white alabastrum(tetraploid) 3	2.856
	CNS0095610	Silvery flower (tetraploid) 1	2.357
	CNS0095611	Silvery flower (tetraploid) 2	1.469
	CNS0095612	Silvery flower (tetraploid) 3	0.427
	CNS0095613	Golden flower (tetraploid) 1	0.364
	CNS0095614	Golden flower (tetraploid) 2	1.374
	CNS0095615	Golden flower (tetraploid) 3	0.303
CRA001975	CRR073297	Stem 1	1.538
	CRR073298	Stem 2	1.059
	CRR073299	Stem 3	1.200
	CRR073300	Leaf 1	1.364
	CRR073301	Leaf 2	1.597
	CRR073302	Leaf 3	1.487
	CRR073303	Juvenile bud 1	0.773
	CRR073304	Juvenile bud 2	0.736
	CRR073305	Juvenile bud 3	0.804
	CRR073306	Third green 1	0.194
	CRR073307	Third green 2	0.000
	CRR073308	Third green 3	0.001
	CRR073309	Second white 1	0.000
	CRR073310	Second white 2	0.000
	CRR073311	Second white 3	0.119
	CRR073312	Silver flowering 1	0.000
	CRR073313	Silver flowering 2	0.000
	CRR073314	Silver flowering 3	0.067
	CRR073315	Gold flowering 1	0.384
	CRR073316	Gold flowering 2	0.059
	CRR073317	Gold flowering 3	0.711
	CRR073318	Tawny withering 1	0.043
	CRR073319	Tawny withering 2	0.151
	CRR073320	Tawny withering 3	0.185