Detail information of GWHGAAZE018501


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrXP_010647831.10PREDICTED: uncharacterized protein LOC100260579 [Vitis vinifera]
Swissprottr|Q0DJS1|TOR_ORYSJ1E-65Serine/threonine-protein kinase TOR
trEMBLtr|V4S7G8|V4S7G8_9ROSI0Uncharacterized protein {ECO:0000313|EMBL:ESR36377.1}
TAIR10AT1G50030.23E-65target of rapamycin

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000005gene2040174120416480-
GWHAAZE00000005mRNA2040174120416480-
GWHAAZE00000005exon2040174120402310-
GWHAAZE00000005exon2040277720403046-
GWHAAZE00000005exon2040320120403293-
GWHAAZE00000005exon2040352120403651-
GWHAAZE00000005exon2040374720403917-
GWHAAZE00000005exon2040403320406847-
GWHAAZE00000005exon2040693220406985-
GWHAAZE00000005exon2040712220407569-
GWHAAZE00000005exon2040777920408835-
GWHAAZE00000005exon2040968920409803-
GWHAAZE00000005exon2041001620410204-
GWHAAZE00000005exon2041073720415684-
GWHAAZE00000005exon2041621820416480-
GWHAAZE00000005CDS2041621820416480-
GWHAAZE00000005CDS2041073720415684-
GWHAAZE00000005CDS2041001620410204-
GWHAAZE00000005CDS2040968920409803-
GWHAAZE00000005CDS2040777920408835-
GWHAAZE00000005CDS2040712220407569-
GWHAAZE00000005CDS2040693220406985-
GWHAAZE00000005CDS2040403320406847-
GWHAAZE00000005CDS2040374720403917-
GWHAAZE00000005CDS2040352120403651-
GWHAAZE00000005CDS2040320120403293-
GWHAAZE00000005CDS2040277720403046-
GWHAAZE00000005CDS2040174120402310-
Transcript Sequence

Network for GWHGAAZE018501

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF15785.6SMG166711832.10E-39
PF00454.28PI3_PI4_kinase202523013.40E-42
Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
K08873SMG1 mRNA surveillance pathway map03015

Gene Ontology

GO term OntologyName
GO:0000184biological_processnuclear-transcribed mRNA catabolic process, nonsense-mediated decay
GO:0016310biological_processphosphorylation
GO:0016301molecular_functionkinase activity
GO:0004674molecular_functionprotein serine/threonine kinase activity

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf8.425
SRR3591706second leaf5.389
SRR3591707mature leaf4.902
SRR3591708Shoot apex6.503
SRR3591709Stem6.348
SRR3591710White floral bud6.321
SRR3591711White flower7.231
SRR3591712Green floral bud6.995
SRR3591713Yellow flower4.629
SRP173429 SRR8316895Juvenile bud stage 4.530
SRR8316896Juvenile bud stage 6.013
SRR8316897Juvenile bud stage 3.473
SRR8316894Third green stage 3.212
SRR8316900Third green stage 5.440
SRR8316901Third green stage 4.931
SRR8316898Complete white stage 0.586
SRR8316899Complete white stage 3.330
SRR8316903Complete white stage 3.553
SRR8316902Silver flowering stage1.279
SRR8316904Silver flowering stage3.258
SRR8316905Silver flowering stage1.414
SRR8316906Gold flowering stage 4.252
SRR8316907Gold flowering stage 3.084
SRR8316908Gold flowering stage 3.636
SRP132670SRR6706286Control4.568
SRR6706287Light intensity 50%5.136
SRR6706288Light intensity 20%5.928
CNP0000432CNS0095592Slightly white alabastrum(diploid) 12.125
CNS0095593Slightly white alabastrum(diploid) 21.747
CNS0095594Slightly white alabastrum(diploid) 32.104
CNS0095595Whole white alabastrum(diploid) 21.613
CNS0095596Whole white alabastrum(diploid) 31.096
CNS0095597Whole white alabastrum(diploid) 41.348
CNS0095598Silvery flower (diploied) 13.089
CNS0095599Silvery flower (diploied) 22.720
CNS0095600Silvery flower (diploied) 38.650
CNS0095601Golden flower (diploid) 12.413
CNS0095602Golden flower (diploid) 29.135
CNS0095603Golden flower (diploid) 38.850
CNS0095604Slightly white alabastrum(tetraploid) 12.935
CNS0095605Slightly white alabastrum(tetraploid) 22.117
CNS0095606Slightly white alabastrum(tetraploid) 37.846
CNS0095607Whole white alabastrum(tetraploid) 11.417
CNS0095608Whole white alabastrum(tetraploid) 20.877
CNS0095609Whole white alabastrum(tetraploid) 33.690
CNS0095610Silvery flower (tetraploid) 17.001
CNS0095611Silvery flower (tetraploid) 28.456
CNS0095612Silvery flower (tetraploid) 33.440
CNS0095613Golden flower (tetraploid) 11.459
CNS0095614Golden flower (tetraploid) 25.058
CNS0095615Golden flower (tetraploid) 34.944
CRA001975CRR073297Stem 14.777
CRR073298Stem 24.272
CRR073299Stem 32.668
CRR073300Leaf 14.194
CRR073301Leaf 23.257
CRR073302Leaf 32.364
CRR073303Juvenile bud 12.046
CRR073304Juvenile bud 21.283
CRR073305Juvenile bud 34.849
CRR073306Third green 10.518
CRR073307Third green 20.390
CRR073308Third green 30.664
CRR073309Second white 10.439
CRR073310Second white 20.956
CRR073311Second white 31.086
CRR073312Silver flowering 10.778
CRR073313Silver flowering 21.037
CRR073314Silver flowering 30.771
CRR073315Gold flowering 11.525
CRR073316Gold flowering 22.325
CRR073317Gold flowering 31.365
CRR073318Tawny withering 12.585
CRR073319Tawny withering 21.825
CRR073320Tawny withering 31.986