Gene detail

Detail information of GWHGAAZE018479

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_008356999.1	0	PREDICTED: phospholipase A-2-activating protein-like [Malus domestica]
Swissprot	tr\|Q3Y8L7\|DAW1_CHLRE	4E-19	Dynein assembly factor with WDR repeat domains 1
trEMBL	tr\|V4SHD8\|V4SHD8_9ROSI	0	Uncharacterized protein {ECO:0000313\|EMBL:ESR36436.1}
TAIR10	AT3G18860.1	0	transducin family protein / WD-40 repeat family protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000005	gene	20112358	20134676	+
GWHAAZE00000005	mRNA	20112358	20134676	+
GWHAAZE00000005	exon	20112358	20112417	+
GWHAAZE00000005	exon	20112891	20113222	+
GWHAAZE00000005	exon	20113667	20113770	+
GWHAAZE00000005	exon	20114038	20114106	+
GWHAAZE00000005	exon	20115315	20115375	+
GWHAAZE00000005	exon	20116218	20116357	+
GWHAAZE00000005	exon	20116795	20116984	+
GWHAAZE00000005	exon	20122316	20122377	+
GWHAAZE00000005	exon	20122888	20122976	+
GWHAAZE00000005	exon	20124314	20124386	+
GWHAAZE00000005	exon	20124478	20124537	+
GWHAAZE00000005	exon	20125994	20126140	+
GWHAAZE00000005	exon	20126251	20126289	+
GWHAAZE00000005	exon	20126387	20126424	+
GWHAAZE00000005	exon	20127345	20127431	+
GWHAAZE00000005	exon	20127752	20127917	+
GWHAAZE00000005	exon	20130315	20130392	+
GWHAAZE00000005	exon	20131469	20131602	+
GWHAAZE00000005	exon	20132840	20132916	+
GWHAAZE00000005	exon	20133436	20133505	+
GWHAAZE00000005	exon	20133629	20133694	+
GWHAAZE00000005	exon	20134542	20134676	+
GWHAAZE00000005	CDS	20112358	20112417	+
GWHAAZE00000005	CDS	20112891	20113222	+
GWHAAZE00000005	CDS	20113667	20113770	+
GWHAAZE00000005	CDS	20114038	20114106	+
GWHAAZE00000005	CDS	20115315	20115375	+
GWHAAZE00000005	CDS	20116218	20116357	+
GWHAAZE00000005	CDS	20116795	20116984	+
GWHAAZE00000005	CDS	20122316	20122377	+
GWHAAZE00000005	CDS	20122888	20122976	+
GWHAAZE00000005	CDS	20124314	20124386	+
GWHAAZE00000005	CDS	20124478	20124537	+
GWHAAZE00000005	CDS	20125994	20126140	+
GWHAAZE00000005	CDS	20126251	20126289	+
GWHAAZE00000005	CDS	20126387	20126424	+
GWHAAZE00000005	CDS	20127345	20127431	+
GWHAAZE00000005	CDS	20127752	20127917	+
GWHAAZE00000005	CDS	20130315	20130392	+
GWHAAZE00000005	CDS	20131469	20131602	+
GWHAAZE00000005	CDS	20132840	20132916	+
GWHAAZE00000005	CDS	20133436	20133505	+
GWHAAZE00000005	CDS	20133629	20133694	+
GWHAAZE00000005	CDS	20134542	20134676	+

Transcript Sequence
>GWHTAAZE018501 ATGGAGATCGATTTTTCGGAGTATCGATTGAGTTGTCAACTACGAGGCCACGAAGACGATGTTCGCGGTATATGTATATGTGACAATGTTGGGATAGCAACTTCATCAAGAGACAGAACCATTAGGTTCTGGACGTTAGGCCGATCCAACAATAGGGACTACACTATGTCCAAGATACTACTGGGTCATACTAGTTTTGTGGGGCCATTGGCTTGGGTTTCACCCAAGGAAGAGTTTCCAGAAGGCTGTATCATATCTGGTGGGATGGACACCCTTGTGTTTGTTTGGAATTTGGCAACAGGAGAGAAAGTTCAGACGTTGAAGGGTCACCAGTTGCAAGTCACCGGCATCACACTGGACGACTCAGAAATTGTATCGTCCTCTGTTGATTGTACATTAAGACGGTGGAGAGGAGGCCAGCAAATTGAGGTATGGGAGGCTCATAAGGCAGCAATTCAAGCAGTTATAAAGTTGCCTTCAGGCGAGCTAGTTACAGGTTCAAGTGACACAACTTTAAAGCTTTGGAAGGGAAAGACATGTACACGTACTTTTGTAGGGCATACAGATACAGTTCGTGGCTTGGGTGTGATGCCTGGTCTGGGAATTCTTTCTGCATCGCATGATGGTACCATAAGGTTGTGGGCTCTAAGTGGCAAAGTTCTAATGGACATGGTTGGCCACACTTCTATTGTCTATTCTGTTGATGCACACGTTTCTGGGCTAATTGTCAGTGGAAGCGAGGATTGTTTTGCAAAGATATGGAAAGATGGGGTTTGTGTTCAAAGCATAGAGCATCCAGGTTGTGTTTGGGATACCAAATTCTTGGAAAATGGTGATATTGTGACTGCATGCTCTGATGGAGTTGTGCGTGTTTGGACAGTACATCAGGAGAAGATTGCTGATCCGCTAGAGCTCGAATCACATGCTTCTCAAGTTTCTCAGTACAAGTGCAGCAGGAAAAGGGTTGGAGGTTTGAAATTGGAAGAATTGCCTGGCTTAGAGGCTCTACAGATTCCAGGAACCAGTGATGGGCAGACAAAAGTAGTCAGAGAAGGGGACAATGGCGTGGCATATGCATGGAATATGAGGGAACATAACTGGGATAAAATTGGCGAAGTTGTTGATGGACCTGATGATAGCATGAACCGCCCTGTCCTTGATGGAACTCAATATGATTATGTATTTGACGTTGATATTGGAGATGGTGAGCCTATTCGTAAATTGCCCTATAATCGATCAGAAAATCCATATACTACCGCTGACAAATGGCTTCTCAAGGAGAATCTGCCTCTTTCCTACCGGCAACAAATTGTAGAATTTATACTACAGAATTCTGGACAAAGAGATTTTGCTCTTGATTCATCATTTCGTGATCCCTTCACTGGATCCAGTGCTTATGTACCTGGACAACCTTCAATCATGTCTGCTGTCTCTACAAAACCAACTTTCAAGCATATTCCTAAGAAAGGGATGCTTGTCTTTGATGTTGCTCAGTTTGATGGGATCCTTAAAAAAGTTGCAGAGTTCAACAATGCTCTGCTATCCGACCTGGAGAAAAAGAACTTGTCGATGACTGAGATAGAGATTTCAAGATTGGGTGCAATTGCTAGAACTTTGAAGGACACATCGCATTATCACACCAGCCGATTTTCAGATGCTGACATTATTTTGGTGCTGAAGCTGATCAAATTATGGCCACTTGAAATGATATTCCCAGTTATTGATATTTTGAGGATGATTGCCCTGCATCCTGATGGGGCTACTGTACTTCTCAAACACATTAATGATGGAAATGATACACTCATGGAGTTGATCCAGAAGGCTACGAAAAGTCCACTTCCGGCGAATCTTCTTACCAGCATCCGGGCTGTGACCAATCTCTTCAAAAATTCATGTTACTATCCTTGGTTACAGAAGCATCGTGGTGAGATTCTTGATGCGTTCTCAAGTTGCTACTCATCTTCAAACAAGAATGTGCAAGTGTCTTACTCTACATTGATACTAAATTACTCCGTTCTTTTGATTGAAAAGAAGGACGAAGAAGGCCAATCTCAAGTTCTTTCTGCAGCTCTTGAGATTGCTGAAGAAGAAAAGCTAGAAGTTGATTCAAAATTCCGAGCTTTAGTTGCGATTGGATCCCTGATGGTGGAGGGTCTGGTAAGAAAAATAGCAGTGGACTTTGACGTTGAGAATATCGCAAAACTAGCAAAGGCGTCTAAAGACACCAAGATTGCTGAAGTTGGAGCTGACATTGAACTGATTACAAAGCAGAGTTGA

Network for GWHGAAZE018479

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00400.33	WD40	13	44	0.012
PF00400.33	WD40	101	136	0.16
PF00400.33	WD40	140	176	0.042
PF00400.33	WD40	179	214	0.0015
PF00400.33	WD40	223	255	0.095
PF00400.33	WD40	258	292	0.0053
PF09070.12	PFU	339	447	2.50E-37
PF08324.12	PUL	486	750	1.10E-57

Protein Sequence

Gene family

Gene family	subfamily
Ubiquitin Family	DWD

KEGG pathway

KO	Enzyme	pathway	mapID
K14018	PLAA, DOA1, UFD3	Protein processing in endoplasmic reticulum	map04141

Gene Ontology

GO term	Ontology	Name
GO:0005515	molecular_function	protein binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	51.763
	SRR3591706	second leaf	25.263
	SRR3591707	mature leaf	17.125
	SRR3591708	Shoot apex	38.401
	SRR3591709	Stem	36.373
	SRR3591710	White floral bud	31.944
	SRR3591711	White flower	42.313
	SRR3591712	Green floral bud	35.894
	SRR3591713	Yellow flower	32.142
SRP173429	SRR8316895	Juvenile bud stage	32.041
	SRR8316896	Juvenile bud stage	47.275
	SRR8316897	Juvenile bud stage	22.135
	SRR8316894	Third green stage	19.317
	SRR8316900	Third green stage	53.533
	SRR8316901	Third green stage	45.994
	SRR8316898	Complete white stage	14.095
	SRR8316899	Complete white stage	48.606
	SRR8316903	Complete white stage	24.173
	SRR8316902	Silver flowering stage	13.986
	SRR8316904	Silver flowering stage	20.699
	SRR8316905	Silver flowering stage	9.340
	SRR8316906	Gold flowering stage	34.786
	SRR8316907	Gold flowering stage	33.539
	SRR8316908	Gold flowering stage	37.528
SRP132670	SRR6706286	Control	49.287
	SRR6706287	Light intensity 50%	51.038
	SRR6706288	Light intensity 20%	54.089
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	24.448
	CNS0095593	Slightly white alabastrum(diploid) 2	23.349
	CNS0095594	Slightly white alabastrum(diploid) 3	25.279
	CNS0095595	Whole white alabastrum(diploid) 2	24.100
	CNS0095596	Whole white alabastrum(diploid) 3	22.130
	CNS0095597	Whole white alabastrum(diploid) 4	20.746
	CNS0095598	Silvery flower (diploied) 1	21.198
	CNS0095599	Silvery flower (diploied) 2	22.607
	CNS0095600	Silvery flower (diploied) 3	40.475
	CNS0095601	Golden flower (diploid) 1	20.550
	CNS0095602	Golden flower (diploid) 2	36.996
	CNS0095603	Golden flower (diploid) 3	35.706
	CNS0095604	Slightly white alabastrum(tetraploid) 1	29.882
	CNS0095605	Slightly white alabastrum(tetraploid) 2	22.294
	CNS0095606	Slightly white alabastrum(tetraploid) 3	55.286
	CNS0095607	Whole white alabastrum(tetraploid) 1	18.859
	CNS0095608	Whole white alabastrum(tetraploid) 2	17.415
	CNS0095609	Whole white alabastrum(tetraploid) 3	46.539
	CNS0095610	Silvery flower (tetraploid) 1	43.599
	CNS0095611	Silvery flower (tetraploid) 2	45.858
	CNS0095612	Silvery flower (tetraploid) 3	38.066
	CNS0095613	Golden flower (tetraploid) 1	19.082
	CNS0095614	Golden flower (tetraploid) 2	38.457
	CNS0095615	Golden flower (tetraploid) 3	34.530
CRA001975	CRR073297	Stem 1	48.483
	CRR073298	Stem 2	45.565
	CRR073299	Stem 3	37.052
	CRR073300	Leaf 1	45.408
	CRR073301	Leaf 2	39.531
	CRR073302	Leaf 3	39.876
	CRR073303	Juvenile bud 1	36.839
	CRR073304	Juvenile bud 2	32.205
	CRR073305	Juvenile bud 3	40.888
	CRR073306	Third green 1	15.847
	CRR073307	Third green 2	11.140
	CRR073308	Third green 3	15.833
	CRR073309	Second white 1	21.169
	CRR073310	Second white 2	25.182
	CRR073311	Second white 3	17.883
	CRR073312	Silver flowering 1	15.479
	CRR073313	Silver flowering 2	15.193
	CRR073314	Silver flowering 3	14.424
	CRR073315	Gold flowering 1	13.010
	CRR073316	Gold flowering 2	24.560
	CRR073317	Gold flowering 3	16.528
	CRR073318	Tawny withering 1	24.114
	CRR073319	Tawny withering 2	19.087
	CRR073320	Tawny withering 3	24.285