Gene detail

Detail information of GWHGAAZE018474

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_002284627.1	0	PREDICTED: dolichyl-diphosphooligosaccharide--protein glycosyltransferase 48 kDa subunit isoform X2 [Vitis vinifera]
Swissprot	tr\|Q6ZLK0\|OST48_ORYSJ	0	Dolichyl-diphosphooligosaccharide--protein glycosyltransferase 48 kDa subunit (Precursor)
trEMBL	tr\|D7TPX8\|D7TPX8_VITVI	0	Dolichyl-diphosphooligosaccharide--protein glycosyltransferase 48 kDa subunit {ECO:0000256\|RuleBase:RU361142}
TAIR10	AT5G66680.1	4E-176	dolichyl-diphosphooligosaccharide-protein glycosyltransferase 48kDa subunit family protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000005	gene	20016496	20023211	+
GWHAAZE00000005	mRNA	20016496	20023211	+
GWHAAZE00000005	exon	20016496	20016772	+
GWHAAZE00000005	exon	20016911	20017047	+
GWHAAZE00000005	exon	20017219	20017344	+
GWHAAZE00000005	exon	20018030	20018083	+
GWHAAZE00000005	exon	20018222	20018335	+
GWHAAZE00000005	exon	20019225	20019280	+
GWHAAZE00000005	exon	20019367	20019408	+
GWHAAZE00000005	exon	20020859	20020934	+
GWHAAZE00000005	exon	20021050	20021121	+
GWHAAZE00000005	exon	20021259	20021384	+
GWHAAZE00000005	exon	20021472	20021576	+
GWHAAZE00000005	exon	20022695	20022778	+
GWHAAZE00000005	exon	20023197	20023211	+
GWHAAZE00000005	CDS	20016496	20016772	+
GWHAAZE00000005	CDS	20016911	20017047	+
GWHAAZE00000005	CDS	20017219	20017344	+
GWHAAZE00000005	CDS	20018030	20018083	+
GWHAAZE00000005	CDS	20018222	20018335	+
GWHAAZE00000005	CDS	20019225	20019280	+
GWHAAZE00000005	CDS	20019367	20019408	+
GWHAAZE00000005	CDS	20020859	20020934	+
GWHAAZE00000005	CDS	20021050	20021121	+
GWHAAZE00000005	CDS	20021259	20021384	+
GWHAAZE00000005	CDS	20021472	20021576	+
GWHAAZE00000005	CDS	20022695	20022778	+
GWHAAZE00000005	CDS	20023197	20023211	+

Transcript Sequence
>GWHTAAZE018496 ATGGCTTCAAGGTTAGTGACAGTGTCATTCCTCTTAGCGATTCCTTTCCTCACAGCCCTCTGTAGCTCATTCTCGACCGATTACCCCTCCGATCGCCGTATTCTGGTATTGCTTGATGACTTGGCCCTTAAATCTTCACACTCTTTGTTCTTCAATTCTCTCCACACTCGAGGCTTCGACCTCGATTACAGGCTCGCTGATGATCGCAATCTCGCCTTACAGAGATACGGCCGGTACTCTTACGATGCCCTCATCGTTTTTGCTCCTTACACCGGAAGTTTTGGAGGATCTATTAACCCGGCAGCTATACTTGATTTTGTTGATTCTGGTCATGATTTGATTATCGCTGCAGATGTGTCTGCTTCTGATTTAATTCGAGAGGTTGCCACGGAATGTGGAGTTGAATTCGATGAGGATCCCGAAGCTGTGGTTATTGATCACACCAGCTATGCAGTTTCTGAAACTGAAGGGGATCATACGTTGATTGCCAGTGATAATTTGATTAAATCTGATGTGATTTTAGGAAGCAAAAAGATAGAGGCCCCCATACTTTTTCAAGGGATTGGTCACTCTTCAAATCCTGCCAATGGCTTGGTGATACAAGCTCTCTCAGCAGCTCCCTCAGCCTATTCCGCCAATCCAAAGTCCAAGTTAACAAATCCTCCAGCGCTCATTGGATCTGCAATCTCTTTAATTTCAGTTGTGCAGGCAAGAAACAATGCTCGAATTTTGATCTCGGGCTCATTGAGAATGTTCAGCAACCAATTCTTCAAATCTGCGGTGCAGAAAGCAGGAAGCACAATTAAACATGACAAATCTGGTAATGAGCAGTTTTTGACTGAACTTAGCAAATGGGTTTTCCATGAAAGAGGCCACCTTAAGGCTGTGAATGTAAGACATCATAAAGTTGGGGAAGCAAATGAACCTTCCATGTATCGCATTACTGATGACGTGGAATATTCTGTTGAGATTTATGAGTGGTCTGGAACGAGTTGGAAACCATTTGTAGCCAATGACGTTCAAGTACAGTTTTACATGATGAGCCCCTATGTCTTGAAAACCTTGTCTACTGACCACAAGGGTGTCTATTACACTGCTTTCAAGGTTCCGGATGTTTATGGTGTATTCCAGTTCAAGGTTGAGTACCAGAGGCTTGGATACACAAGCTTGAGCTTGTCAAAGCAGATTCCAGTCCGGCCATTTAGACACGATGAATATGAAAGGTTCCTCACAGCGGCTTTTCCTTACTATGGAGCATCATTTTCTATGCAAATGAGAGCCTGA

Network for GWHGAAZE018474

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF03345.15	DDOST_48kD	34	424	3.90E-124

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K12670	WBP1	Metabolic pathways	map01100
		N-Glycan biosynthesis	map00510
		Various types of N-glycan biosynthesis	map00513
		Protein processing in endoplasmic reticulum	map04141

Gene Ontology

GO term	Ontology	Name
GO:0018279	biological_process	protein N-linked glycosylation via asparagine
GO:0005789	cellular_component	endoplasmic reticulum membrane

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	30.491
	SRR3591706	second leaf	13.722
	SRR3591707	mature leaf	12.130
	SRR3591708	Shoot apex	28.321
	SRR3591709	Stem	22.660
	SRR3591710	White floral bud	25.151
	SRR3591711	White flower	25.875
	SRR3591712	Green floral bud	27.614
	SRR3591713	Yellow flower	20.035
SRP173429	SRR8316895	Juvenile bud stage	15.407
	SRR8316896	Juvenile bud stage	23.938
	SRR8316897	Juvenile bud stage	12.265
	SRR8316894	Third green stage	9.742
	SRR8316900	Third green stage	30.657
	SRR8316901	Third green stage	25.206
	SRR8316898	Complete white stage	9.937
	SRR8316899	Complete white stage	27.145
	SRR8316903	Complete white stage	16.917
	SRR8316902	Silver flowering stage	8.051
	SRR8316904	Silver flowering stage	12.453
	SRR8316905	Silver flowering stage	5.853
	SRR8316906	Gold flowering stage	16.531
	SRR8316907	Gold flowering stage	18.910
	SRR8316908	Gold flowering stage	22.474
SRP132670	SRR6706286	Control	24.798
	SRR6706287	Light intensity 50%	26.590
	SRR6706288	Light intensity 20%	25.397
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	22.359
	CNS0095593	Slightly white alabastrum(diploid) 2	20.761
	CNS0095594	Slightly white alabastrum(diploid) 3	19.207
	CNS0095595	Whole white alabastrum(diploid) 2	17.677
	CNS0095596	Whole white alabastrum(diploid) 3	17.160
	CNS0095597	Whole white alabastrum(diploid) 4	17.696
	CNS0095598	Silvery flower (diploied) 1	24.693
	CNS0095599	Silvery flower (diploied) 2	17.169
	CNS0095600	Silvery flower (diploied) 3	26.492
	CNS0095601	Golden flower (diploid) 1	15.753
	CNS0095602	Golden flower (diploid) 2	25.709
	CNS0095603	Golden flower (diploid) 3	22.191
	CNS0095604	Slightly white alabastrum(tetraploid) 1	24.650
	CNS0095605	Slightly white alabastrum(tetraploid) 2	18.871
	CNS0095606	Slightly white alabastrum(tetraploid) 3	39.598
	CNS0095607	Whole white alabastrum(tetraploid) 1	13.952
	CNS0095608	Whole white alabastrum(tetraploid) 2	11.384
	CNS0095609	Whole white alabastrum(tetraploid) 3	29.673
	CNS0095610	Silvery flower (tetraploid) 1	30.862
	CNS0095611	Silvery flower (tetraploid) 2	31.146
	CNS0095612	Silvery flower (tetraploid) 3	26.458
	CNS0095613	Golden flower (tetraploid) 1	14.438
	CNS0095614	Golden flower (tetraploid) 2	24.707
	CNS0095615	Golden flower (tetraploid) 3	15.335
CRA001975	CRR073297	Stem 1	23.747
	CRR073298	Stem 2	26.305
	CRR073299	Stem 3	31.983
	CRR073300	Leaf 1	27.417
	CRR073301	Leaf 2	25.178
	CRR073302	Leaf 3	31.327
	CRR073303	Juvenile bud 1	35.777
	CRR073304	Juvenile bud 2	24.707
	CRR073305	Juvenile bud 3	36.770
	CRR073306	Third green 1	6.601
	CRR073307	Third green 2	8.593
	CRR073308	Third green 3	7.266
	CRR073309	Second white 1	17.664
	CRR073310	Second white 2	10.122
	CRR073311	Second white 3	9.639
	CRR073312	Silver flowering 1	8.211
	CRR073313	Silver flowering 2	14.620
	CRR073314	Silver flowering 3	6.843
	CRR073315	Gold flowering 1	11.803
	CRR073316	Gold flowering 2	14.622
	CRR073317	Gold flowering 3	14.467
	CRR073318	Tawny withering 1	27.169
	CRR073319	Tawny withering 2	26.211
	CRR073320	Tawny withering 3	34.341