Gene detail

Detail information of GWHGAAZE018463

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_003631644.1	1.4448E-142	PREDICTED: ras-related protein Rab7 [Vitis vinifera]
Swissprot	tr\|P31022\|RAB7_PEA	3E-138	Ras-related protein Rab7
trEMBL	tr\|A5BFL3\|A5BFL3_VITVI	5E-143	Putative uncharacterized protein {ECO:0000313\|EMBL:CAN61313.1}
TAIR10	AT3G18820.1	9E-109	RAB GTPase homolog G3F

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000005	gene	19855519	19859698	+
GWHAAZE00000005	mRNA	19855519	19859698	+
GWHAAZE00000005	exon	19855519	19855571	+
GWHAAZE00000005	exon	19855892	19855918	+
GWHAAZE00000005	exon	19856068	19856167	+
GWHAAZE00000005	exon	19856707	19856769	+
GWHAAZE00000005	exon	19858074	19858220	+
GWHAAZE00000005	exon	19858481	19858561	+
GWHAAZE00000005	exon	19858673	19858818	+
GWHAAZE00000005	exon	19859360	19859698	+
GWHAAZE00000005	CDS	19855519	19855571	+
GWHAAZE00000005	CDS	19855892	19855918	+
GWHAAZE00000005	CDS	19856068	19856167	+
GWHAAZE00000005	CDS	19856707	19856769	+
GWHAAZE00000005	CDS	19858074	19858220	+
GWHAAZE00000005	CDS	19858481	19858561	+
GWHAAZE00000005	CDS	19858673	19858818	+
GWHAAZE00000005	CDS	19859360	19859426	+
GWHAAZE00000005	three_prime_UTR	19859427	19859698	+

Transcript Sequence
>GWHTAAZE018485 ATGCCTTCCCGAAGAAGAACACTTTTAAAGGTCATAATCCTCGGCGACAGCGGGGTGGGGAAGACCTCGTTGATGAATCAATATGTGAATAAGAAGTTCAGCAATCAGTACAAGGCAACTATAGGAGCTGATTTCTTGACAAAGGAAGTACAATTTGAAGACAGGCTCTTTACTTTGCAGGGTACACTGAAGTGGCTGGGTGTGAGGATTAGAAGGGTGAGGATGCTATGGGGCTCGGCTACTATATGGGATACAGCTGGACAGGAAAGATTTCAGAGTCTGGGTGTTGCATTCTACCGGGGCGCAGATTGCTGTGTCCTTGTATATGATGTTAACGTGATGAAGTCATTTGATAATCTAAACAATTGGAGGGAAGAGTTCCTTATTCAGGCAAGTCCTTCAGATCCTGATAATTTCCCGTTTGTAGTTCTTGGAAACAAAACCGATGTGGATGGTGGAAATAGTAGAGTGGTTTCTGAGAAGAAAGCCCGGGCTTGGTGTGCCTCAAAAGGGAATATTCCATACTTCGAGACCTCTGCCAAGGAGGGCATCAATGTTGAAGAAGCTTTTCAGTGCATAGCAAAGAACGCACTGAAGAGTGGGGAAGAGGAAGAAATATACTTGCCGGACACCATTGATGTTGGGAGCAGCAGCCAGCAGAGGTCCGGTGGATGCGAGTGCTAAAGCCCAACTTTTGATTATTGATTAAAAAGAGTGGATTCTTGGAAGCAATTCGACTTCCTTTTTGTTATTTTTAGTTCGATTATTATTAATATCAAATTTTATTGGTATGTATGAGGCTAGAGATACCTGTACATTATTGTGTTTGCATAAGGAGTAGATTTATCTCCAATGTTGGTTTGTATGGTGTGCCTTCCGTGTAAAGTACTATAGAGTTCCATTTTAATTTCACAATTAATGTTGAAATTTGATGCAGATTGGTAATATAACATAAA

Network for GWHGAAZE018463

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00071.23	Ras	10	60	3.20E-14
PF00071.23	Ras	81	198	1.80E-33

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K07897	RAB7A	Endocytosis	map04144
		Phagosome	map04145
		Autophagy - animal	map04140
		Autophagy - yeast	map04138
		Mitophagy - animal	map04137

Gene Ontology

GO term	Ontology	Name
GO:0005525	molecular_function	GTP binding
GO:0003924	molecular_function	GTPase activity

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	128.294
	SRR3591706	second leaf	58.386
	SRR3591707	mature leaf	24.157
	SRR3591708	Shoot apex	102.961
	SRR3591709	Stem	91.415
	SRR3591710	White floral bud	132.306
	SRR3591711	White flower	135.436
	SRR3591712	Green floral bud	100.921
	SRR3591713	Yellow flower	127.417
SRP173429	SRR8316895	Juvenile bud stage	61.199
	SRR8316896	Juvenile bud stage	88.085
	SRR8316897	Juvenile bud stage	41.673
	SRR8316894	Third green stage	35.768
	SRR8316900	Third green stage	122.304
	SRR8316901	Third green stage	117.745
	SRR8316898	Complete white stage	93.421
	SRR8316899	Complete white stage	157.834
	SRR8316903	Complete white stage	125.109
	SRR8316902	Silver flowering stage	102.998
	SRR8316904	Silver flowering stage	118.600
	SRR8316905	Silver flowering stage	64.672
	SRR8316906	Gold flowering stage	199.076
	SRR8316907	Gold flowering stage	185.220
	SRR8316908	Gold flowering stage	180.756
SRP132670	SRR6706286	Control	99.624
	SRR6706287	Light intensity 50%	112.141
	SRR6706288	Light intensity 20%	117.859
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	98.522
	CNS0095593	Slightly white alabastrum(diploid) 2	114.622
	CNS0095594	Slightly white alabastrum(diploid) 3	100.577
	CNS0095595	Whole white alabastrum(diploid) 2	106.477
	CNS0095596	Whole white alabastrum(diploid) 3	99.992
	CNS0095597	Whole white alabastrum(diploid) 4	102.135
	CNS0095598	Silvery flower (diploied) 1	77.274
	CNS0095599	Silvery flower (diploied) 2	94.976
	CNS0095600	Silvery flower (diploied) 3	118.861
	CNS0095601	Golden flower (diploid) 1	78.174
	CNS0095602	Golden flower (diploid) 2	85.905
	CNS0095603	Golden flower (diploid) 3	83.365
	CNS0095604	Slightly white alabastrum(tetraploid) 1	109.231
	CNS0095605	Slightly white alabastrum(tetraploid) 2	109.080
	CNS0095606	Slightly white alabastrum(tetraploid) 3	143.623
	CNS0095607	Whole white alabastrum(tetraploid) 1	101.712
	CNS0095608	Whole white alabastrum(tetraploid) 2	102.465
	CNS0095609	Whole white alabastrum(tetraploid) 3	126.940
	CNS0095610	Silvery flower (tetraploid) 1	147.026
	CNS0095611	Silvery flower (tetraploid) 2	108.170
	CNS0095612	Silvery flower (tetraploid) 3	152.873
	CNS0095613	Golden flower (tetraploid) 1	111.725
	CNS0095614	Golden flower (tetraploid) 2	118.919
	CNS0095615	Golden flower (tetraploid) 3	98.618
CRA001975	CRR073297	Stem 1	59.449
	CRR073298	Stem 2	53.196
	CRR073299	Stem 3	53.916
	CRR073300	Leaf 1	77.664
	CRR073301	Leaf 2	74.804
	CRR073302	Leaf 3	90.052
	CRR073303	Juvenile bud 1	87.001
	CRR073304	Juvenile bud 2	91.528
	CRR073305	Juvenile bud 3	60.808
	CRR073306	Third green 1	116.164
	CRR073307	Third green 2	131.521
	CRR073308	Third green 3	106.890
	CRR073309	Second white 1	91.478
	CRR073310	Second white 2	96.748
	CRR073311	Second white 3	70.142
	CRR073312	Silver flowering 1	73.294
	CRR073313	Silver flowering 2	59.777
	CRR073314	Silver flowering 3	61.182
	CRR073315	Gold flowering 1	27.649
	CRR073316	Gold flowering 2	29.413
	CRR073317	Gold flowering 3	27.456
	CRR073318	Tawny withering 1	50.996
	CRR073319	Tawny withering 2	47.555
	CRR073320	Tawny withering 3	65.743