Detail information of GWHGAAZE018462


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrCDO97062.10unnamed protein product [Coffea canephora]
Swissprottr|Q9XI96|PERK7_ARATH0Proline-rich receptor-like protein kinase PERK7
trEMBLtr|A0A068TM62|A0A068TM62_COFCA0Coffea canephora DH200=94 genomic scaffold, scaffold_1 {ECO:0000313|EMBL:CDO97062.1}
TAIR10AT2G18470.13E-144roline-rich extensin-like receptor kinase 4

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000005gene1984026319850816-
GWHAAZE00000005mRNA1984026319850816-
GWHAAZE00000005exon1985076519850816-
GWHAAZE00000005exon1985032119850497-
GWHAAZE00000005exon1984880219849365-
GWHAAZE00000005exon1984852019848606-
GWHAAZE00000005exon1984837819848448-
GWHAAZE00000005exon1984819719848273-
GWHAAZE00000005exon1984788019848021-
GWHAAZE00000005exon1984756519847726-
GWHAAZE00000005exon1984665119846861-
GWHAAZE00000005exon1984026319840585-
GWHAAZE00000005CDS1985076519850816-
GWHAAZE00000005CDS1985032119850497-
GWHAAZE00000005CDS1984880219849365-
GWHAAZE00000005CDS1984852019848606-
GWHAAZE00000005CDS1984837819848448-
GWHAAZE00000005CDS1984819719848273-
GWHAAZE00000005CDS1984788019848021-
GWHAAZE00000005CDS1984756519847726-
GWHAAZE00000005CDS1984665119846861-
GWHAAZE00000005CDS1984026319840585-
Transcript Sequence

Network for GWHGAAZE018462

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF07714.18PK_Tyr_Ser-Thr1824497.50E-47
PF04669.14Polysacc_synt_44786082.20E-33
Protein Sequence

Gene family

Gene familysubfamily
Protein Kinases FamilyRLK-Pelle_PERK-1

KEGG pathway

KO Enzyme pathway mapID
--------

Gene Ontology

GO term OntologyName
GO:0006468biological_processprotein phosphorylation
GO:0004672molecular_functionprotein kinase activity
GO:0005524molecular_functionATP binding

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf0.102
SRR3591706second leaf0.050
SRR3591707mature leaf0.000
SRR3591708Shoot apex0.076
SRR3591709Stem0.185
SRR3591710White floral bud25.172
SRR3591711White flower1.137
SRR3591712Green floral bud30.829
SRR3591713Yellow flower0.580
SRP173429 SRR8316895Juvenile bud stage 0.049
SRR8316896Juvenile bud stage 0.094
SRR8316897Juvenile bud stage 0.621
SRR8316894Third green stage 2.504
SRR8316900Third green stage 32.054
SRR8316901Third green stage 31.126
SRR8316898Complete white stage 0.001
SRR8316899Complete white stage 0.159
SRR8316903Complete white stage 0.000
SRR8316902Silver flowering stage0.098
SRR8316904Silver flowering stage0.399
SRR8316905Silver flowering stage0.068
SRR8316906Gold flowering stage 0.096
SRR8316907Gold flowering stage 0.000
SRR8316908Gold flowering stage 0.000
SRP132670SRR6706286Control15.036
SRR6706287Light intensity 50%13.779
SRR6706288Light intensity 20%12.028
CNP0000432CNS0095592Slightly white alabastrum(diploid) 110.035
CNS0095593Slightly white alabastrum(diploid) 215.839
CNS0095594Slightly white alabastrum(diploid) 37.838
CNS0095595Whole white alabastrum(diploid) 243.775
CNS0095596Whole white alabastrum(diploid) 354.447
CNS0095597Whole white alabastrum(diploid) 448.066
CNS0095598Silvery flower (diploied) 10.803
CNS0095599Silvery flower (diploied) 22.657
CNS0095600Silvery flower (diploied) 30.927
CNS0095601Golden flower (diploid) 10.976
CNS0095602Golden flower (diploid) 20.756
CNS0095603Golden flower (diploid) 30.581
CNS0095604Slightly white alabastrum(tetraploid) 141.993
CNS0095605Slightly white alabastrum(tetraploid) 242.812
CNS0095606Slightly white alabastrum(tetraploid) 30.236
CNS0095607Whole white alabastrum(tetraploid) 172.301
CNS0095608Whole white alabastrum(tetraploid) 275.435
CNS0095609Whole white alabastrum(tetraploid) 342.168
CNS0095610Silvery flower (tetraploid) 10.425
CNS0095611Silvery flower (tetraploid) 21.890
CNS0095612Silvery flower (tetraploid) 36.338
CNS0095613Golden flower (tetraploid) 10.609
CNS0095614Golden flower (tetraploid) 20.181
CNS0095615Golden flower (tetraploid) 32.659
CRA001975CRR073297Stem 11.037
CRR073298Stem 21.023
CRR073299Stem 30.578
CRR073300Leaf 125.069
CRR073301Leaf 218.835
CRR073302Leaf 311.110
CRR073303Juvenile bud 111.711
CRR073304Juvenile bud 29.143
CRR073305Juvenile bud 31.094
CRR073306Third green 14.231
CRR073307Third green 23.832
CRR073308Third green 34.527
CRR073309Second white 10.000
CRR073310Second white 20.813
CRR073311Second white 31.454
CRR073312Silver flowering 13.284
CRR073313Silver flowering 23.855
CRR073314Silver flowering 32.826
CRR073315Gold flowering 13.553
CRR073316Gold flowering 20.805
CRR073317Gold flowering 31.054
CRR073318Tawny withering 14.170
CRR073319Tawny withering 24.625
CRR073320Tawny withering 34.018