Gene detail

Detail information of GWHGAAZE018451

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_004150415.1	0	PREDICTED: probable receptor-like serine/threonine-protein kinase At4g34500-like [Cucumis sativus]
Swissprot	tr\|Q6NKZ9\|Y4345_ARATH	0	Probable receptor-like serine/threonine-protein kinase At4g34500
trEMBL	tr\|A0A0A0K3S5\|A0A0A0K3S5_CUCSA	0	Uncharacterized protein {ECO:0000313\|EMBL:KGN44350.1}
TAIR10	AT4G34500.1	4E-166	Protein kinase superfamily protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000005	gene	19753954	19757581	+
GWHAAZE00000005	mRNA	19753954	19757581	+
GWHAAZE00000005	exon	19753954	19754516	+
GWHAAZE00000005	exon	19755802	19755906	+
GWHAAZE00000005	exon	19756003	19756125	+
GWHAAZE00000005	exon	19756813	19756983	+
GWHAAZE00000005	exon	19757117	19757246	+
GWHAAZE00000005	exon	19757336	19757581	+
GWHAAZE00000005	CDS	19753954	19754516	+
GWHAAZE00000005	CDS	19755802	19755906	+
GWHAAZE00000005	CDS	19756003	19756125	+
GWHAAZE00000005	CDS	19756813	19756983	+
GWHAAZE00000005	CDS	19757117	19757246	+
GWHAAZE00000005	CDS	19757336	19757581	+

Transcript Sequence
>GWHTAAZE018473 ATGGCGGTTTCCGGCAACAGCTCTCCCTCCGTCAGTCTTACTGCCAAAACTCCTATTTTTGGATTAAAGCTCTATATAGTGATCGTAGTAACAATTGTAAGTTTGATCGCTATTTTCGTTTTGATATTTCTCTTTATCCGTTCCAATCGCAAATCGAAGAGTCTCCAAATGCGCGTGAAGCACAGTTCAGGATTTTTGCCTTTGGTTTGCAAAGAGATCAGTGAAATTAGGGATTCGGATCATAAAACAGGTCGTGAAATTGTTGAATTTGAGAGGAAGGAAAATGAGAGTATGGTAATTTGCAGCGTAGAAGTGCCGAAGATAAGCGGAACTAAGGATTCGAGTAGCAATGAGTCGAGTACGAGCCAGAGTGAAGCTTCGACATTGTCGGCCGAGGGTTTGAACGTTGGTTGGGGCCGGTGGTACAGCTTGAAGGAGCTGGAGTTGGCGACTAATGGATTTTCCGTGGGGAATGTGATCGGAGAAGGTGGATATGGAATTGTGTACAGAGGAGTTTTGCTCGATGGCTCTGTTGTGGCTGTGAAGAACCTTTTGAACAATAAGGGTCAGGCAGAGAAGGAGTTCAAGGTGGAAGTTGAAGCCATTGGAAAAGTAAGGCATAAGAACCTGGTGGGACTAATTGGATATTGTGCAGAAGGTGTTCAAAGGATGCTTGTGTACGAATATGTTGATAACGGCAACTTGGAGCAATGGTTACATGGTGATGTAGGGCCAGTTAGCCCTCTAACCTGGGATATTCGAATAAGGATTGCAGTTGGGACTGCTAAAGGACTGGCATATTTACATGAAGGATTAGAACCCAAAGTTGTACATCGCGATGTAAAATCCAGCAACATTCTTTTGGATAGAAAGTGGAGTGCGAAGGTTTCAGATTTTGGACTTGCCAAGCTATTAGGATCGGAGAAAAGCTATGTGACGACAAGAGTGATGGGGACATTTGGATACGTTTCACCTGACTATGCAAGCACAGGCATGCTTAATGAAGGGAGTGATGTATATAGTTTTGGAGTTCTACTCATGGAAATGATTACTGGAAGGAGCCCTGTTGATTATTCCAGAGCACCAGGAGAGATGAACTTGGTCGATTGGTTTAAAGGAATGGTGGCAAGTCGTCGTGGGGAAGAATTGGTGGACCCCTTGATTGAAGTGAAACCTTCTCCAAGATCTTTGAAGCGGGCTTTGCTGGTCTGCCTTCGTTGTATAGATTTGGACCCTAATAAGCGTCCAAAGATGGGGCAAATTGTACACATGCTTGAAGCAGATGAATTTCCTTTCCGCTCTGTAAGTCCTTCCCATTCCCATTCTACATATCATTGA

Network for GWHGAAZE018451

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00069.26	Pkinase	155	423	1.40E-45

Protein Sequence

Gene family

Gene family	subfamily
Protein Kinases Family	RLK-Pelle_RLCK-V

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0006468	biological_process	protein phosphorylation
GO:0004672	molecular_function	protein kinase activity
GO:0005524	molecular_function	ATP binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	54.619
	SRR3591706	second leaf	30.836
	SRR3591707	mature leaf	16.545
	SRR3591708	Shoot apex	50.009
	SRR3591709	Stem	77.657
	SRR3591710	White floral bud	16.233
	SRR3591711	White flower	12.053
	SRR3591712	Green floral bud	17.399
	SRR3591713	Yellow flower	2.275
SRP173429	SRR8316895	Juvenile bud stage	27.785
	SRR8316896	Juvenile bud stage	36.702
	SRR8316897	Juvenile bud stage	16.165
	SRR8316894	Third green stage	15.825
	SRR8316900	Third green stage	33.662
	SRR8316901	Third green stage	32.360
	SRR8316898	Complete white stage	6.191
	SRR8316899	Complete white stage	43.819
	SRR8316903	Complete white stage	13.157
	SRR8316902	Silver flowering stage	5.424
	SRR8316904	Silver flowering stage	11.361
	SRR8316905	Silver flowering stage	5.782
	SRR8316906	Gold flowering stage	13.815
	SRR8316907	Gold flowering stage	14.269
	SRR8316908	Gold flowering stage	16.258
SRP132670	SRR6706286	Control	23.949
	SRR6706287	Light intensity 50%	28.508
	SRR6706288	Light intensity 20%	28.872
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	25.791
	CNS0095593	Slightly white alabastrum(diploid) 2	25.201
	CNS0095594	Slightly white alabastrum(diploid) 3	21.533
	CNS0095595	Whole white alabastrum(diploid) 2	18.099
	CNS0095596	Whole white alabastrum(diploid) 3	10.737
	CNS0095597	Whole white alabastrum(diploid) 4	16.286
	CNS0095598	Silvery flower (diploied) 1	27.527
	CNS0095599	Silvery flower (diploied) 2	27.861
	CNS0095600	Silvery flower (diploied) 3	19.156
	CNS0095601	Golden flower (diploid) 1	30.712
	CNS0095602	Golden flower (diploid) 2	19.561
	CNS0095603	Golden flower (diploid) 3	20.516
	CNS0095604	Slightly white alabastrum(tetraploid) 1	22.750
	CNS0095605	Slightly white alabastrum(tetraploid) 2	17.340
	CNS0095606	Slightly white alabastrum(tetraploid) 3	45.226
	CNS0095607	Whole white alabastrum(tetraploid) 1	14.710
	CNS0095608	Whole white alabastrum(tetraploid) 2	7.234
	CNS0095609	Whole white alabastrum(tetraploid) 3	19.062
	CNS0095610	Silvery flower (tetraploid) 1	12.538
	CNS0095611	Silvery flower (tetraploid) 2	12.819
	CNS0095612	Silvery flower (tetraploid) 3	51.310
	CNS0095613	Golden flower (tetraploid) 1	7.538
	CNS0095614	Golden flower (tetraploid) 2	13.178
	CNS0095615	Golden flower (tetraploid) 3	17.507
CRA001975	CRR073297	Stem 1	48.706
	CRR073298	Stem 2	33.578
	CRR073299	Stem 3	38.198
	CRR073300	Leaf 1	32.632
	CRR073301	Leaf 2	30.416
	CRR073302	Leaf 3	24.943
	CRR073303	Juvenile bud 1	27.870
	CRR073304	Juvenile bud 2	15.622
	CRR073305	Juvenile bud 3	32.992
	CRR073306	Third green 1	20.500
	CRR073307	Third green 2	13.018
	CRR073308	Third green 3	15.246
	CRR073309	Second white 1	21.042
	CRR073310	Second white 2	10.708
	CRR073311	Second white 3	12.464
	CRR073312	Silver flowering 1	8.294
	CRR073313	Silver flowering 2	9.665
	CRR073314	Silver flowering 3	7.025
	CRR073315	Gold flowering 1	8.698
	CRR073316	Gold flowering 2	9.403
	CRR073317	Gold flowering 3	8.646
	CRR073318	Tawny withering 1	36.270
	CRR073319	Tawny withering 2	25.143
	CRR073320	Tawny withering 3	47.139