Gene detail

Detail information of GWHGAAZE018444

Functional Annotation

Database	Orthologs	Annotation
Nr	XP_011092797.1	PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At2g16250 [Sesamum indicum]
Swissprot	tr\|C0LGK4\|Y2165_ARATH	Probable LRR receptor-like serine/threonine-protein kinase At2g16250 (Precursor)
trEMBL	tr\|A0A068TM84\|A0A068TM84_COFCA	Coffea canephora DH200=94 genomic scaffold, scaffold_1 {ECO:0000313\|EMBL:CDO97049.1}
TAIR10	AT2G16250.1	Leucine-rich repeat protein kinase family protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000005	gene	19659787	19666275	+
GWHAAZE00000005	mRNA	19659787	19666275	+
GWHAAZE00000005	exon	19659787	19661723	+
GWHAAZE00000005	exon	19663575	19663703	+
GWHAAZE00000005	exon	19664643	19664665	+
GWHAAZE00000005	exon	19665674	19666275	+
GWHAAZE00000005	CDS	19659787	19661723	+
GWHAAZE00000005	CDS	19663575	19663703	+
GWHAAZE00000005	CDS	19664643	19664665	+
GWHAAZE00000005	CDS	19665674	19666275	+

Transcript Sequence
>GWHTAAZE018466 ATGGCGGATACAAAGGGCATATTAGGGTTTTTCCTTCTGCTCTTACTCATTCACTCTACATTCCAACAATTGAATTCACGCGTAGAGAGAGCGGCTTTGCTTCAACTCAGATCATCTTTAGGCTTAAGAAGCAAAGAGTGGCCGATAAAATCAGACCCTTGCTTAATCTGGGCCGGTATTCAATGCTTTAATGGCAGAGTTACTGGGATCAATATCTCAGGGTTTAAGCGAACTCGACTTGGTTATCAAAACCCCCAATTCTCCGTTGAAGCCCTAGCCAATTTCAGTCAATTGGCGACTTTTAATGCTTCTGGGTTTGCTCTTCCGGGTTCTATCCCCGATTGGTTTGGGCAAAGGCTCAGTGCACTCCAAATGCTCGATCTAAGGTCTTGTTCCATTGTTGGTGCTATTCCTTCTAATCTTGGAAATATGACTAATCTCACTGCTCTTTATTTATCCGATAATACTCTTACTGGTATAATCCCTTCTACTTTGGGTCAATTGTTGGGTCTTTTGGTTCTTGACCTTGGGCAGAATTCACTCACTGGATCCATTCCTTTGTCTTTTGCGTCTCTTGGGAATCTCACCTTGCTTGACATGTCCTCCAATTTCTTGTCCGGATCATTCCCTCCTGGTATTGGTACTCTTTCCAAGCTTCAATTCTTGAATCTTTCTAGTAATAGTCTCTCTTCTGCGATTCCTGCTCAACTTGGAAATCTATCTAGTTTGGTTGACCTTGATCTGAGCTCCAATTCTTTTTCTGGGTTAGTGCCTCAAGATTTGAGAGGTTTAAGGAATTTGCAGAAAATGCTAATCGGGAACAATTTGCTTGCTGGTTCTCTGTCTGGTAACTTGTTTACTCGTTTAACGCGATTGCAGATTCTAGCTGTGAATCACAATGATTTCACCGGGGAACTTCCTGATATTTTATGGTCAATGCCCCAATTGCGCTTTCTTGATGCCGCGGGAAATAATTTCACCGGTACCCTACCCAATCTTAGTTCGAATGCTAATACTTCTTCTGGTGCAGTATTCAACCTCTCTCAGAATCTGTTTTATGGAGGTCTCACATCCCTACTCAGGGGGTTCAATTCTTTGGATCTGTCTGGCAATTATTTCCAAGGCAAGGTTCCAGATTACAGCATTAGTAATGTATCTCTTAGTAGAAATTGCCTTCAAAATGTTTCAAGCCAGAGAACTTTGGCAGAATGTGCATCGTTCTACGCCGAGAGGGGTTTGACATTTGATAATTTTGGAGTGCCAAGTGCCCCACAATCTCCTCACCCTAAAGGTGACAATAAGAGAGGCAAAAAAGTATACATAATAGTCGGAGTTCTTGGGGGTCTTGTGTTTATTGCACTTTTGGTAACTTTGCTGGTACTGCTGATATTGTGCACCCGTAAGAGGGCCACAACGAATCAAAGAGGCACCGGTGTGGGGCCTGTTCCTACGGGTGCTACTCCATCATCACCACCTGGGGTGCCCTTGAACTTTTCTTCTTTAGGGGAAGCATTCACATTTCAACAGATTCTTCAAGCCACGAGTGAGTTCAGTGATGTAAACCTCATTAAACATGGCCATTCTGGTGATCTCTTTCGCGGTATCTTGGAAGGTGGAATCCCTGTAGTCATCAAAAAGGTTGATTTAGGTTCGGTCAAAAAGGAAGCTTACATGGTGGAGCTGGATTTTTTCAGTAAGGTTTCTCATCCCCGATTAGTCCCCCTCTTGGGTCATTGCTTGGAAAACGAGAATGAGAAGCTTTTGGTTTACAAGTATATGCCAAATGGGGACCTTTCAAATTCTTTGTTCAGGAAAACCGATACAGACGATGACAGATTACAGTCGTTGGATTGGATAACGAGACTAAAAATTGCCACCGGAGCAGCAGAGGGTCTGTCTTATCTGCATCATGAATGTAATCCGCCACTTGTTCACAGAGATGTACAAGCCAGCAGTATTCTTCTTGATGATAAATTTGAAGTGCGGTTAGGGAGCCTAAGTGAGGTCTGTGCTCAAGAAGGGGACGCTCATCAAAGCATGATTACCAGATTGCTGCGGTTACCAACGACATCTGAACAAGGTGCTTCTGGTACACATACGGCAACATGTGCCTACGACGTTTACTGCTTTGGGAAAGTGTTGCTCGAGCTAGTAACAGGTAAACTGGGAATCAGCGCGTCCACTTCAAAAGATTGGTTGGAAGCTACGCTACCATACATCAGCATCTACGATAAGGAACTTGTGACCAACATTGTGGACCCTTCTCTAATAATAGACGAAGACTTATTAGAGGAAGTGTGGGCCATGGCCGTGGTCGCCAGGTCCTGCCTCAACCCAAAGCCTTCGAGGCGTCCCCTCATGAGATACATTCTCAAAGCCTTAGAAAATCCAGCGAAGGTAGTGAGAGAAGAGAACACTAGCTCTGCCAGGCTTAGAGCCACTTCCTCTAGAGGGTCTTGGAATGCTGCCCTTTTCGGTGGCAGCTGGCGGCACAGTTCCTCTGACGTGGCGGCTGTTCCAGCAGGATCTGCCAGCAAGGCGGAAGGGGGGAGTAGGACGACGGGTTCTCAGGGGAGTGGTGGGCAGAATGCTGGTGGTGGGGCTGATAATTCGTCTTCGACAAGACGGCATTCTAGTAGAGATATATGCCCGGAGCCGTTGGATGATGTGGAGAGATTGCATGAGGATTAG

Network for GWHGAAZE018444

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF13855.7	LRR_8	145	203	4.50E-10
PF13855.7	LRR_8	218	277	6.70E-08
PF07714.18	PK_Tyr_Ser-Thr	523	793	3.20E-22

Protein Sequence

Gene family

Gene family	subfamily
Protein Kinases Family	RLK-Pelle_LRR-XIV

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0006468	biological_process	protein phosphorylation
GO:0004672	molecular_function	protein kinase activity
GO:0005524	molecular_function	ATP binding
GO:0005515	molecular_function	protein binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	9.055
	SRR3591706	second leaf	3.467
	SRR3591707	mature leaf	4.042
	SRR3591708	Shoot apex	5.916
	SRR3591709	Stem	5.829
	SRR3591710	White floral bud	5.908
	SRR3591711	White flower	5.773
	SRR3591712	Green floral bud	9.180
	SRR3591713	Yellow flower	3.417
SRP173429	SRR8316895	Juvenile bud stage	3.985
	SRR8316896	Juvenile bud stage	9.377
	SRR8316897	Juvenile bud stage	2.680
	SRR8316894	Third green stage	3.848
	SRR8316900	Third green stage	12.220
	SRR8316901	Third green stage	10.367
	SRR8316898	Complete white stage	1.485
	SRR8316899	Complete white stage	9.099
	SRR8316903	Complete white stage	3.637
	SRR8316902	Silver flowering stage	1.156
	SRR8316904	Silver flowering stage	2.339
	SRR8316905	Silver flowering stage	0.912
	SRR8316906	Gold flowering stage	3.287
	SRR8316907	Gold flowering stage	3.630
	SRR8316908	Gold flowering stage	2.575
SRP132670	SRR6706286	Control	7.436
	SRR6706287	Light intensity 50%	7.713
	SRR6706288	Light intensity 20%	9.178
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	4.837
	CNS0095593	Slightly white alabastrum(diploid) 2	3.576
	CNS0095594	Slightly white alabastrum(diploid) 3	5.410
	CNS0095595	Whole white alabastrum(diploid) 2	3.421
	CNS0095596	Whole white alabastrum(diploid) 3	4.622
	CNS0095597	Whole white alabastrum(diploid) 4	3.871
	CNS0095598	Silvery flower (diploied) 1	3.554
	CNS0095599	Silvery flower (diploied) 2	2.210
	CNS0095600	Silvery flower (diploied) 3	5.726
	CNS0095601	Golden flower (diploid) 1	3.423
	CNS0095602	Golden flower (diploid) 2	4.789
	CNS0095603	Golden flower (diploid) 3	4.584
	CNS0095604	Slightly white alabastrum(tetraploid) 1	6.825
	CNS0095605	Slightly white alabastrum(tetraploid) 2	5.492
	CNS0095606	Slightly white alabastrum(tetraploid) 3	9.697
	CNS0095607	Whole white alabastrum(tetraploid) 1	3.979
	CNS0095608	Whole white alabastrum(tetraploid) 2	3.105
	CNS0095609	Whole white alabastrum(tetraploid) 3	7.877
	CNS0095610	Silvery flower (tetraploid) 1	4.404
	CNS0095611	Silvery flower (tetraploid) 2	4.313
	CNS0095612	Silvery flower (tetraploid) 3	5.503
	CNS0095613	Golden flower (tetraploid) 1	2.407
	CNS0095614	Golden flower (tetraploid) 2	3.611
	CNS0095615	Golden flower (tetraploid) 3	1.910
CRA001975	CRR073297	Stem 1	7.399
	CRR073298	Stem 2	7.017
	CRR073299	Stem 3	4.701
	CRR073300	Leaf 1	7.048
	CRR073301	Leaf 2	6.526
	CRR073302	Leaf 3	4.860
	CRR073303	Juvenile bud 1	5.837
	CRR073304	Juvenile bud 2	3.550
	CRR073305	Juvenile bud 3	6.715
	CRR073306	Third green 1	1.593
	CRR073307	Third green 2	1.098
	CRR073308	Third green 3	2.553
	CRR073309	Second white 1	2.249
	CRR073310	Second white 2	2.705
	CRR073311	Second white 3	2.902
	CRR073312	Silver flowering 1	1.956
	CRR073313	Silver flowering 2	1.698
	CRR073314	Silver flowering 3	1.687
	CRR073315	Gold flowering 1	2.505
	CRR073316	Gold flowering 2	3.722
	CRR073317	Gold flowering 3	1.691
	CRR073318	Tawny withering 1	5.606
	CRR073319	Tawny withering 2	2.854
	CRR073320	Tawny withering 3	4.560