Gene detail

Detail information of GWHGAAZE018442

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_007199864.1	3.7557E-151	hypothetical protein PRUPE_ppa005829mg [Prunus persica]
Swissprot	tr\|Q8GY61\|BH063_ARATH	3E-59	Transcription factor bHLH63
trEMBL	tr\|M5VVW1\|M5VVW1_PRUPE	1E-151	Uncharacterized protein {ECO:0000313\|EMBL:EMJ01063.1}
TAIR10	AT4G34530.1	6E-45	cryptochrome-interacting basic-helix-loop-helix 1

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000005	gene	19596704	19598462	-
GWHAAZE00000005	mRNA	19596704	19598462	-
GWHAAZE00000005	exon	19596704	19596946	-
GWHAAZE00000005	exon	19597047	19597118	-
GWHAAZE00000005	exon	19597216	19597350	-
GWHAAZE00000005	exon	19597414	19597719	-
GWHAAZE00000005	exon	19597986	19598462	-
GWHAAZE00000005	CDS	19597986	19598462	-
GWHAAZE00000005	CDS	19597414	19597719	-
GWHAAZE00000005	CDS	19597216	19597350	-
GWHAAZE00000005	CDS	19597047	19597118	-
GWHAAZE00000005	CDS	19596704	19596946	-

Transcript Sequence
>GWHTAAZE018464 ATGAACAGAGCTTTACCGGAGATAATACTACCTGGTGGTATGGACATAACCGTGCTCGAGAGGCAACGTGCTCGAATGAAGTGGCAACCAGACCAACTTCAACAACCACAACCAAGCTTTTTCAATGGAAATCATGAGCTCAGTGGGTTCTCTCTAACCACTCAAGCTCAAGAATTTTCGGGATTGATCAGTAACGAGTTGGGTATCGGCGAGCTTGTGAGTCGAGTGGTGAAACCCGACCCGGGTTTCGAGAATGGGTGGGCCGACATTGGAGGCGTTGACGGTTATTTGGGATATGGGGCCTGTGGGTATGGGAATGCGGGTTTCGAGATGAGTTCTGCAATTTCGAGGACCATCCGCTGCCCTCCTGCAGTGGCAGCCACTGCGGTGGCTGCAGTCGCTGATGAAAAGCTGATCTCTGCTGTAGGAAGAGAGAGCTTCAAGAAGAGGAAAGCTGATAAGACCCAGAACCTAAAGGTAGTTTCAGAAGCGGACACCAAAGAGAAGAGGATCAAAGGATCAGCCGAAGATGGAGATTCGAAGATCACAGAGAAAAATAGCAGCACAAAGAAGAACATCACCACCCACAATAATAATAACAACAGAGAAACTTCCACTGATACTTCAAAGGAGACTTCTAAAGTTTCTGATGTTCAAAAACCCGATTACATTCACGTTCGAGCACGTCGTGGCCAAGCCACTGACAGCCACAGCTTAGCTGAACGAGTATGTTCGACTTTCGAAATTTGTTTTATTTTTTCTGTTAAAAACATTTTTCTTCTGGTAAGGAGGGAAAAAATCAGCGAGAGAATGAAATACCTACAAGACTTGGTACCTGGGTGCAATAAGATCACAGGGAAAGCCGGAATGCTAGATGAAATCATCAATTATGTCCAATCTCTGCAAAGACAAGTAGAGTTCCTGTCTATGAAACTAGCTGCAGTTAATCCAAGGCTTGACTTTAACATCGATAATTTCTTTACGAAAGAGATTTTTCCGGCTAGCACATCTAATTTTCCAGCAGTTGGGGTATCATCAGAAATGGTTAATCCTGCGTTTTTTGAGCTAAATCAACTGCAGCAAGTGGTTTCCTGTGGACTTGAAATGGGGATAAACCCTTCTGATATGGCACTCCGACGAACTATTAGCGCTCCAGTACCGATACCAGATACATTTTTGGATTCATCGTGTTTCAACGTAATTTCTTCTATTCCATTGTGTATTTATGGATAA

Network for GWHGAAZE018442

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
--	--	--	--	--

Protein Sequence

Gene family

Gene family	subfamily
Transcription Factors Family	bHLH

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0046983	molecular_function	protein dimerization activity

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	34.099
	SRR3591706	second leaf	39.621
	SRR3591707	mature leaf	36.291
	SRR3591708	Shoot apex	42.471
	SRR3591709	Stem	12.937
	SRR3591710	White floral bud	38.656
	SRR3591711	White flower	10.692
	SRR3591712	Green floral bud	20.195
	SRR3591713	Yellow flower	2.426
SRP173429	SRR8316895	Juvenile bud stage	5.088
	SRR8316896	Juvenile bud stage	6.557
	SRR8316897	Juvenile bud stage	2.398
	SRR8316894	Third green stage	6.365
	SRR8316900	Third green stage	17.861
	SRR8316901	Third green stage	18.405
	SRR8316898	Complete white stage	21.165
	SRR8316899	Complete white stage	47.040
	SRR8316903	Complete white stage	31.183
	SRR8316902	Silver flowering stage	4.252
	SRR8316904	Silver flowering stage	7.400
	SRR8316905	Silver flowering stage	4.646
	SRR8316906	Gold flowering stage	4.974
	SRR8316907	Gold flowering stage	4.657
	SRR8316908	Gold flowering stage	4.168
SRP132670	SRR6706286	Control	17.969
	SRR6706287	Light intensity 50%	16.765
	SRR6706288	Light intensity 20%	13.092
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	2.701
	CNS0095593	Slightly white alabastrum(diploid) 2	9.068
	CNS0095594	Slightly white alabastrum(diploid) 3	2.924
	CNS0095595	Whole white alabastrum(diploid) 2	5.464
	CNS0095596	Whole white alabastrum(diploid) 3	4.631
	CNS0095597	Whole white alabastrum(diploid) 4	4.950
	CNS0095598	Silvery flower (diploied) 1	7.331
	CNS0095599	Silvery flower (diploied) 2	2.748
	CNS0095600	Silvery flower (diploied) 3	6.624
	CNS0095601	Golden flower (diploid) 1	2.507
	CNS0095602	Golden flower (diploid) 2	4.784
	CNS0095603	Golden flower (diploid) 3	5.460
	CNS0095604	Slightly white alabastrum(tetraploid) 1	5.197
	CNS0095605	Slightly white alabastrum(tetraploid) 2	4.223
	CNS0095606	Slightly white alabastrum(tetraploid) 3	15.868
	CNS0095607	Whole white alabastrum(tetraploid) 1	3.460
	CNS0095608	Whole white alabastrum(tetraploid) 2	3.450
	CNS0095609	Whole white alabastrum(tetraploid) 3	5.816
	CNS0095610	Silvery flower (tetraploid) 1	8.439
	CNS0095611	Silvery flower (tetraploid) 2	8.744
	CNS0095612	Silvery flower (tetraploid) 3	14.811
	CNS0095613	Golden flower (tetraploid) 1	3.830
	CNS0095614	Golden flower (tetraploid) 2	4.801
	CNS0095615	Golden flower (tetraploid) 3	7.067
CRA001975	CRR073297	Stem 1	17.612
	CRR073298	Stem 2	21.820
	CRR073299	Stem 3	21.367
	CRR073300	Leaf 1	35.359
	CRR073301	Leaf 2	31.378
	CRR073302	Leaf 3	27.167
	CRR073303	Juvenile bud 1	34.026
	CRR073304	Juvenile bud 2	43.545
	CRR073305	Juvenile bud 3	54.871
	CRR073306	Third green 1	12.139
	CRR073307	Third green 2	17.266
	CRR073308	Third green 3	18.479
	CRR073309	Second white 1	6.391
	CRR073310	Second white 2	4.805
	CRR073311	Second white 3	2.473
	CRR073312	Silver flowering 1	0.771
	CRR073313	Silver flowering 2	0.788
	CRR073314	Silver flowering 3	2.463
	CRR073315	Gold flowering 1	34.359
	CRR073316	Gold flowering 2	35.057
	CRR073317	Gold flowering 3	40.409
	CRR073318	Tawny withering 1	9.151
	CRR073319	Tawny withering 2	4.330
	CRR073320	Tawny withering 3	8.561