Gene detail

Detail information of GWHGAAZE018422

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	CDO97016.1	0	unnamed protein product [Coffea canephora]
Swissprot	tr\|F4I8S3\|CLSY3_ARATH	2E-93	SNF2 domain-containing protein CLASSY 3
trEMBL	tr\|A0A068TLA1\|A0A068TLA1_COFCA	0	Coffea canephora DH200=94 genomic scaffold, scaffold_1 {ECO:0000313\|EMBL:CDO97016.1}
TAIR10	AT2G16390.1	0	SNF2 domain-containing protein / helicase domain-containing protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000005	gene	19328559	19338563	-
GWHAAZE00000005	mRNA	19328559	19338563	-
GWHAAZE00000005	exon	19338511	19338563	-
GWHAAZE00000005	exon	19338197	19338282	-
GWHAAZE00000005	exon	19336772	19337295	-
GWHAAZE00000005	exon	19334347	19334595	-
GWHAAZE00000005	exon	19331623	19331778	-
GWHAAZE00000005	exon	19330459	19330940	-
GWHAAZE00000005	exon	19328697	19330005	-
GWHAAZE00000005	exon	19328559	19328618	-
GWHAAZE00000005	CDS	19338511	19338563	-
GWHAAZE00000005	CDS	19338197	19338282	-
GWHAAZE00000005	CDS	19336772	19337295	-
GWHAAZE00000005	CDS	19334347	19334595	-
GWHAAZE00000005	CDS	19331623	19331778	-
GWHAAZE00000005	CDS	19330459	19330940	-
GWHAAZE00000005	CDS	19328697	19330005	-
GWHAAZE00000005	CDS	19328559	19328618	-

Transcript Sequence
>GWHTAAZE018444 TCCTGCAATTTCTTCTCAGGTTGGGGAGGAAGAAGGTTGCCCTGCGCTAAAATTGAAGAAATGGATTCAGTCGCTCATGGTTGGCCGAACAATTATTCCCCACAATTTTCAACTCCATTGCAGCCATCCACTCCTACTGATGTGTATTCTAAGGGGAGGAAAAGGATGAAAGTCACTGGAGCAAAAGAAGATGGAAAAGAAGTTTCTAAGAATTCAAAAGTTGTAGATCATTCTGATCCATTTGTACTATCCAATTGGTTGCAAGGGCTAGATCAGGGGAAATTTGGCAGTGTCACTAAAGAAATCGAAGATCTTCTTGAGCGGAGGTCACATATGTTGAATGCATTATACAGAATGCATCCTTCACTGACAAATTTGTGCATGGATAGGAGCCCTGGTGATGAGGTTGTGGAGGGAAATCAACAGGATAGGCCTACGGCAGATAGTCTCATTCTGCTGGAGGATGATCGTGCTGCAAACATTCCGGCATCAAAGCCAGTTGTAATTATCGATTTAGATGATGAAGAGCCTGCCAATCAGAGGCCTTTTAATGGAGAACTTGGGAATCAGAGGCCTTTTCGTCCATACCAAGAGGTTTTCTTGAAGAAGCCAGCTGGCGAGTTTCTGATGAGGGATTTTGTTTCAAGTCTTCCTGCCTTTGAGGACAAGGATCGTGTTCAACGGAAAGCTTTGACGAGAGATGCAAGTCTTGATAGGAATTCTGTTCAAAGGCAAGCATTGATAGGAGACACCAGTGAATCAGAAGTCAAAAAAGAAAAAGATAAAGGTGTATATCTCGGTGTAGATGATGATGAAATGGCAATTGATGACTTGGGTCTGCAATCGGACGTCAATTTCGATGGTCTGGCTGATATCTGGAAGGAAATGACAGTTGCATTAGAATGTTCTAAGGATACTACTGGAGATCCATCTGATGAATATGCAAGAGAGAGTGAAGAAGAGTGCGAACATTCTTTTCTCTTGAAAGATGACATTGGCTACGTTTGTCGTATCTGTGGAGTCATTCAGAGAAAAATTGAAACAATAATTGAGTACCAGTACGCAAAGAACACGAGGAATCCCAGACTCTCCTACAGGTATGAAGGACGGGGTACAAAAGACAAAGACGAAACCGAACTCCTTCCCGAGGGACTGAAAAAATCAGAGAACGATTTCACAGTAACTGATATCTCTGCACATCCAAGGCACAGGAAACAAATGAAACCTCATCAAGTCGACGGCTTCAATTTTCTGCTGAGCAACTTGGTGACTGATAACCCAGGAGGTTGCATCCTAGCCCACGCTCCAGGATCGGGCAAAACCTTTATGATCATCAGCTTTATGCAGAGTTTTATGGCTAAGTACCCCTTTGCAAGGCCACTAGTGGTGCTACCGAGAGGAATCTTACCGACCTGGAAGAAAGAATTTCAGAGGTGGCAAGTTGAAGACATTCCTTTACTTGATTGCTACTCTGCAAAAGCTGACAGCCGGGCTCACCAGCTTGACGTGCTCAAACAATGGGCAGCCAAGAGAAGCATTCTGTTTCTTGGATACAAGCAATTCTCGTCTATTGTTTGTGACAATGATCCCAGCAAGACTGCAGCTGCTTGCCAAGAGATACTCTTGACTTATCCTTCCATACTTATTCTTGATGAAGGGCACACCCCTAGAAATCAGGACACTGATGTCCTCTCCTCTCTTGAAAAAGTCCAAACGCCTCGAAAGGTTGTACTTTCGGGTACCCTTTATCAGAATCATGTAAAAGAAGTCTTTAACATATTGAACCTTGTTCGCCCCAAGTTTCTTAAGTTGGAAACTTCTAAAGCCATTAAGAGGCGGATCTTGAGTAGAGTTCCTATATCGAGCCGAAGAAATTTATTGAAGAAGGGTACGGATAACGAGTTCTACGAGTTGGTAGAGCACACTCTGCTAAAAGATGATAATTTCAAGAGGAAGGCGACTGTCATTCAAGATCTTCGTGAGATGACGAGCAAGGTTCTTCACTATTACAAGGGTGATTTTCTTGATGAACTCCCAGGGCTCATTGACTTCACTGTGTTTCTCAATCTTAGCCACGCACAAAAACGTGAGGTTTCCGAGTTGAAGAAGCTTGGTAGAAAATTCAAGATAAGTTCGGACGGAAGTGCTTTGTATGTGCACCCACAGCTGAAAACTCTCTCAAAGAATGTGGCGGTTAAAGACCGGGTTGATGAGGACAAGATTGATGCATTGCTCGATAAATTAGATGAGAGAGAAGGTGTTAAAGGAAAGTTCTATCTTCAGCTACTTCGTTTATGTGAGTCGGCTGGGGAAAAGCTGCTTGTGTTTAGTCAGTATCTCCTTCCATTGAAATTCTTGGAGAGGTTGACTGTAAAAGTCAAAGGATGGAGCCCAGGCAAAGAGATATTCATGATCACGGGCGATTCGGATTCTGATGTTAGAGAAACGTCTATGGATCGGTTCAATAATTCTCCGGAAGCTAGGGTTTTCTTCGGTTCGATAAAAGCGTGCGGGGAAGGTATATCTCTTGTTGGGGCTTCAAGGATTATCATACTGGATGTACATTTGAACCCGTCTGTAACCCGCCAAGCAATTGGGCGTGCATTCCGGCCGGGTCAGGAGAAGATGGTGTATACTTACCGATTGGTTGCAGTGGGTTCACCTGAAGAGGAGGACCACGCTACTTGCTTCAAAAAGGAGTCCATTGCCAAGATGTGGTTCGAGTGGAATGAGTATTTAGGCAACCTCGACTTTGAAATGGAGAAGGCTAATGTTACGAATTGTGGTGACATGTTTTTGGAAACTCCTTTGTTACATGCAGATGTCCATTCACTATACAAGAGGTCAGCAATAATTTTTGTAAGGGGTGAGAAGTTTGAAGGGTCAGTTTTGCTGGTTGCTATGTTCTGTATATACTAA

Network for GWHGAAZE018422

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00176.24	SNF2_N	424	615	5.90E-20
PF00271.32	Helicase_C	762	871	2.30E-08

Protein Sequence

Gene family

Gene family	subfamily
Transcription Factors Family	SNF2

KEGG pathway

KO	Enzyme	pathway	mapID
K10875	RAD54L, RAD54	Homologous recombination	map03440

Gene Ontology

GO term	Ontology	Name
GO:0005524	molecular_function	ATP binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	10.780
	SRR3591706	second leaf	7.044
	SRR3591707	mature leaf	4.912
	SRR3591708	Shoot apex	11.770
	SRR3591709	Stem	8.148
	SRR3591710	White floral bud	6.597
	SRR3591711	White flower	6.820
	SRR3591712	Green floral bud	7.793
	SRR3591713	Yellow flower	3.613
SRP173429	SRR8316895	Juvenile bud stage	8.684
	SRR8316896	Juvenile bud stage	10.946
	SRR8316897	Juvenile bud stage	4.881
	SRR8316894	Third green stage	3.535
	SRR8316900	Third green stage	7.288
	SRR8316901	Third green stage	6.863
	SRR8316898	Complete white stage	3.925
	SRR8316899	Complete white stage	9.071
	SRR8316903	Complete white stage	6.369
	SRR8316902	Silver flowering stage	1.912
	SRR8316904	Silver flowering stage	3.164
	SRR8316905	Silver flowering stage	1.333
	SRR8316906	Gold flowering stage	3.945
	SRR8316907	Gold flowering stage	3.995
	SRR8316908	Gold flowering stage	4.809
SRP132670	SRR6706286	Control	5.295
	SRR6706287	Light intensity 50%	5.638
	SRR6706288	Light intensity 20%	5.373
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	6.867
	CNS0095593	Slightly white alabastrum(diploid) 2	6.881
	CNS0095594	Slightly white alabastrum(diploid) 3	6.781
	CNS0095595	Whole white alabastrum(diploid) 2	5.993
	CNS0095596	Whole white alabastrum(diploid) 3	5.414
	CNS0095597	Whole white alabastrum(diploid) 4	3.612
	CNS0095598	Silvery flower (diploied) 1	7.567
	CNS0095599	Silvery flower (diploied) 2	6.318
	CNS0095600	Silvery flower (diploied) 3	6.978
	CNS0095601	Golden flower (diploid) 1	8.023
	CNS0095602	Golden flower (diploid) 2	8.908
	CNS0095603	Golden flower (diploid) 3	7.401
	CNS0095604	Slightly white alabastrum(tetraploid) 1	6.758
	CNS0095605	Slightly white alabastrum(tetraploid) 2	5.490
	CNS0095606	Slightly white alabastrum(tetraploid) 3	11.703
	CNS0095607	Whole white alabastrum(tetraploid) 1	4.693
	CNS0095608	Whole white alabastrum(tetraploid) 2	3.108
	CNS0095609	Whole white alabastrum(tetraploid) 3	6.101
	CNS0095610	Silvery flower (tetraploid) 1	5.690
	CNS0095611	Silvery flower (tetraploid) 2	7.452
	CNS0095612	Silvery flower (tetraploid) 3	3.271
	CNS0095613	Golden flower (tetraploid) 1	1.657
	CNS0095614	Golden flower (tetraploid) 2	3.708
	CNS0095615	Golden flower (tetraploid) 3	1.685
CRA001975	CRR073297	Stem 1	10.414
	CRR073298	Stem 2	10.849
	CRR073299	Stem 3	9.331
	CRR073300	Leaf 1	8.735
	CRR073301	Leaf 2	7.351
	CRR073302	Leaf 3	6.437
	CRR073303	Juvenile bud 1	5.457
	CRR073304	Juvenile bud 2	4.832
	CRR073305	Juvenile bud 3	8.910
	CRR073306	Third green 1	1.790
	CRR073307	Third green 2	1.190
	CRR073308	Third green 3	1.833
	CRR073309	Second white 1	1.648
	CRR073310	Second white 2	1.011
	CRR073311	Second white 3	1.159
	CRR073312	Silver flowering 1	0.754
	CRR073313	Silver flowering 2	1.134
	CRR073314	Silver flowering 3	0.757
	CRR073315	Gold flowering 1	2.376
	CRR073316	Gold flowering 2	6.202
	CRR073317	Gold flowering 3	3.935
	CRR073318	Tawny withering 1	5.776
	CRR073319	Tawny withering 2	4.052
	CRR073320	Tawny withering 3	5.119