Gene detail

Detail information of GWHGAAZE018415

Functional Annotation

Database	Orthologs	Annotation
Nr	XP_007042074.1	Vacuolar proton ATPase A3 isoform 1 [Theobroma cacao]
Swissprot	tr\|Q8W4S4\|VHAA3_ARATH	V-type proton ATPase subunit a3
trEMBL	tr\|A0A061DYW1\|A0A061DYW1_THECC	V-type proton ATPase subunit a {ECO:0000256\|RuleBase:RU361189}
TAIR10	AT4G39080.1	vacuolar proton ATPase A3

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000005	gene	19245793	19260705	+
GWHAAZE00000005	mRNA	19245793	19260705	+
GWHAAZE00000005	exon	19245793	19246085	+
GWHAAZE00000005	exon	19248150	19248194	+
GWHAAZE00000005	exon	19248304	19248426	+
GWHAAZE00000005	exon	19248511	19248618	+
GWHAAZE00000005	exon	19249030	19249140	+
GWHAAZE00000005	exon	19250088	19250261	+
GWHAAZE00000005	exon	19250953	19251090	+
GWHAAZE00000005	exon	19254189	19254296	+
GWHAAZE00000005	exon	19254440	19254547	+
GWHAAZE00000005	exon	19254726	19254874	+
GWHAAZE00000005	exon	19256516	19256669	+
GWHAAZE00000005	exon	19257772	19257932	+
GWHAAZE00000005	exon	19258018	19258224	+
GWHAAZE00000005	exon	19258614	19258797	+
GWHAAZE00000005	exon	19258933	19259016	+
GWHAAZE00000005	exon	19259173	19259366	+
GWHAAZE00000005	exon	19259903	19259962	+
GWHAAZE00000005	exon	19260501	19260705	+
GWHAAZE00000005	five_prime_UTR	19245793	19245953	+
GWHAAZE00000005	CDS	19245954	19246085	+
GWHAAZE00000005	CDS	19248150	19248194	+
GWHAAZE00000005	CDS	19248304	19248426	+
GWHAAZE00000005	CDS	19248511	19248618	+
GWHAAZE00000005	CDS	19249030	19249140	+
GWHAAZE00000005	CDS	19250088	19250261	+
GWHAAZE00000005	CDS	19250953	19251090	+
GWHAAZE00000005	CDS	19254189	19254296	+
GWHAAZE00000005	CDS	19254440	19254547	+
GWHAAZE00000005	CDS	19254726	19254874	+
GWHAAZE00000005	CDS	19256516	19256669	+
GWHAAZE00000005	CDS	19257772	19257932	+
GWHAAZE00000005	CDS	19258018	19258224	+
GWHAAZE00000005	CDS	19258614	19258797	+
GWHAAZE00000005	CDS	19258933	19259016	+
GWHAAZE00000005	CDS	19259173	19259366	+
GWHAAZE00000005	CDS	19259903	19259962	+
GWHAAZE00000005	CDS	19260501	19260705	+

Transcript Sequence
>GWHTAAZE018437 ACAATAATTATTCGACTGCACAGATTGTGTGTGGCGGTAAGTAGTCCCCAGCTGTTACAGTAATCGATCTGCGACAGAGGGGGAAGGTGGACAGAAAAAGAGACTAACAGATAGAAAGAGAAAGGAGGAGGAGATAATCGAATCGAAGGAAGGGCCACAGAATGGGGTGCTGTCCGCCGATGGATCTGTTCCGGTCAGAGCCGATGCATCTGGTTCAAATCATTATCCCCATCGAAGCCGCTCACTTGACCGTCGCGTATCTCGGTGACCTCGGTCTCATTCAATTCAAAGACCTAAATGGAGAAAAGAGCCCGTTTCAGCGAACGTATGCCACTCAGATTAAAAGATGTGGAGAGATGGCGCGCAAGTTACGTTTTTTCAGGGATCAAATGGCAAAGGCAGGTTTGACACCTTCAACAGTATCTGTGACACAAGCTGATAATGATGTAGACACTCTGGAGGTAAAACTTGGAGATCTTGAAGCTGAGCTGATTGAAATGAATGCGAATGGTGATAAGTTGCAGCGTGCTTATAGTGAACTTGTAGAGTATAAGCTGGTTCTGCAGAAGGCTGGTGAATTTTTTAAAGCAGCACACAGCAGTGCTGCAGCTCAACAGAGAGAATTCGAATCACGTCAGATTGGTGAAGAATCCTTGGAAACTCCTTTGTTAATGGAACAAGGAAGTACAACTGATCAGTCCAAACAAGTTAAGTTGGGGTTTCTCACTGGCCTTGTACCTAAAGAGAGATCTTTGGCATTTGAAAGGATTCTATTTCGTGCTACCAGGGGCAATGTGTTTTTGAAACAGGCTGTTGTTGAAGACCCTGTCATTGATCCTGTTTCTGGAGAGAAGGTTGAGAAAAATGTTTTTGCTGTCTTCTTCTCTGGAGAAAGAGCAAAGAGCAAAATTCTTAAAATTTGTGAAGCTTTTGGAGCAAACCGGTACCCTTTTACTGAGGACCTGGGCAAACAAGCCCAAATGATAATTGAGGTCTCTGGAAGACTCTCAGAACTGAAGACTGCAATAGATGCTGGGCTGCTGCACCGTGACAATTTGTTAAAAACTATTAGCGAACAATACGAGCAGTGGAACGTCTTGGTGAAGCGGGAGAAATCCATTTACTACACTCTAAACATGCTTAGCATTGATGTGACAAAGAAGTGTCTCGTGGGAGAAGGGTGGAGCCCTGTGTTTGCAATAAAACAGATTCAGGATGCACTGCAGAGGGCAACAAGTGACTCCAACTCACAAGTTGGTGCTATTCTCCAAGTTTTGCGTACAAAAGAGTTACCACCAACTTATTTTCGGACGAACAAATTTACTTCAGCTTTTCAAGAGATTGTTGATGCGTACGGGGTGGCCAAGTATCAAGAAGCAAATCCTTCTGTATTCACTGTTGTTACATTCCCGTTTCTTTTCGCAGTCATGTTTGGGGACTGGGGGCATGGTATATGCCTCTTACTGGCAACACTATATTTTATAATCAGGGAAAGGAAACTCTCCAGTCAGAAGCTTGGAGACATTACAGAAATGACCTTTGGTGGCCGTTATGTAATTTTGATGATGTCACTCTTCTCAATCTACACGGGGTTGATATACAATGAGTTCTTCTCGGTCCCATTTGAATTATTTGCTCGGTCAGCCTATGATTGCCGTGATCCTTATTGCAGGGATTCTACTACTGTAGGCTTGCTTAAGGTGCGTGAAACTTACCCATTTGGTGTGGATCCAGCATGGCACGGTTCCCGCAGCGAGTTGCCATTCCTTAATTCACTGAAGATGAAAATGTCAATCCTTCTTGGGGTAGCCCAAATGAACCTGGGAATAATAATGAGCTTTTTCAATGCCTTATTCTTTCAAAATTGCGTGAATGTCTGGTTTATGTTTATTCCTCAGATGATATTTTTGAATGGTCTGTTTGGCTACCTTTCCCTCCTTATCATTGTGAAGTGGTGCACTGGTTCAAAAGCTGATTTGTACCATGTAATGATTTACATGTTCCTTGGTCCTACCGACGATCTTGGCGAAAACCAGCTTTTCCCTGGGCAGAAAACACTTCAGCAAGTACTTCTATTGTTGTCCCTTGTTGCTGTTCCATGGATGCTGCTCCCTAAGCCTTTTATTTTGAAGGCACAACACAAAAAGAGGCACCAAGGACAGTCTTACACACCTCTTCAAGACACGGATGAGTCTTTGCTGTTGGAGGGAAATAATGATCCCCATGATCACGAAGAATTTGAGTTTAGCGAAGTTTTTGTACATCAGCTCATACATACAATCGAGTTTGTACTTGGAGCTGTCTCGAATACAGCTTCGTACCTTCGTTTGTGGGCCCTCAGCCTTGCACATTCTGAGTTGTCCAGTGTGTTCTACGAGAAGGTTCTTCTACTTGCTTGGGGGTACAACAATGTACTTATCCTTATAGTGGGAATCATAGTGTTTATTTTCGCAACGGTGGGAGTGTTACTAGTAATGGAAACATTGAGTGCTTTCCTGCATGCATTGCGACTCCACTGGGTTGAGTTTCAGAACAAGTTTTATGAAGGGGATGGATACAAGTTCTATCCATTCTCATTTGCATTAATTGGTGATGAGGAGGAATGA

Network for GWHGAAZE018415

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF01496.20	V_ATPase_I	33	806	1.30E-294

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K02154	ATPeV0A, ATP6N	Metabolic pathways	map01100
		Oxidative phosphorylation	map00190
		Phagosome	map04145
		Lysosome	map04142
		Collecting duct acid secretion	map04966
		Synaptic vesicle cycle	map04721

Gene Ontology

GO term	Ontology	Name
GO:1902600	biological_process	proton transmembrane transport
GO:0000220	cellular_component	vacuolar proton-transporting V-type ATPase, V0 domain
GO:0033179	cellular_component	proton-transporting V-type ATPase, V0 domain
GO:0015078	molecular_function	proton transmembrane transporter activity

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	120.527
	SRR3591706	second leaf	83.317
	SRR3591707	mature leaf	59.848
	SRR3591708	Shoot apex	80.450
	SRR3591709	Stem	89.709
	SRR3591710	White floral bud	112.718
	SRR3591711	White flower	95.069
	SRR3591712	Green floral bud	104.714
	SRR3591713	Yellow flower	76.681
SRP173429	SRR8316895	Juvenile bud stage	54.770
	SRR8316896	Juvenile bud stage	72.665
	SRR8316897	Juvenile bud stage	38.059
	SRR8316894	Third green stage	34.824
	SRR8316900	Third green stage	105.703
	SRR8316901	Third green stage	91.001
	SRR8316898	Complete white stage	55.632
	SRR8316899	Complete white stage	119.444
	SRR8316903	Complete white stage	87.871
	SRR8316902	Silver flowering stage	51.478
	SRR8316904	Silver flowering stage	83.969
	SRR8316905	Silver flowering stage	39.261
	SRR8316906	Gold flowering stage	116.000
	SRR8316907	Gold flowering stage	120.662
	SRR8316908	Gold flowering stage	131.481
SRP132670	SRR6706286	Control	94.622
	SRR6706287	Light intensity 50%	101.839
	SRR6706288	Light intensity 20%	106.387
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	34.698
	CNS0095593	Slightly white alabastrum(diploid) 2	38.438
	CNS0095594	Slightly white alabastrum(diploid) 3	39.005
	CNS0095595	Whole white alabastrum(diploid) 2	43.402
	CNS0095596	Whole white alabastrum(diploid) 3	43.318
	CNS0095597	Whole white alabastrum(diploid) 4	45.543
	CNS0095598	Silvery flower (diploied) 1	45.650
	CNS0095599	Silvery flower (diploied) 2	50.716
	CNS0095600	Silvery flower (diploied) 3	108.809
	CNS0095601	Golden flower (diploid) 1	38.098
	CNS0095602	Golden flower (diploid) 2	100.935
	CNS0095603	Golden flower (diploid) 3	96.896
	CNS0095604	Slightly white alabastrum(tetraploid) 1	54.673
	CNS0095605	Slightly white alabastrum(tetraploid) 2	42.722
	CNS0095606	Slightly white alabastrum(tetraploid) 3	126.540
	CNS0095607	Whole white alabastrum(tetraploid) 1	44.270
	CNS0095608	Whole white alabastrum(tetraploid) 2	39.637
	CNS0095609	Whole white alabastrum(tetraploid) 3	105.684
	CNS0095610	Silvery flower (tetraploid) 1	106.843
	CNS0095611	Silvery flower (tetraploid) 2	107.302
	CNS0095612	Silvery flower (tetraploid) 3	104.310
	CNS0095613	Golden flower (tetraploid) 1	38.997
	CNS0095614	Golden flower (tetraploid) 2	88.128
	CNS0095615	Golden flower (tetraploid) 3	75.038
CRA001975	CRR073297	Stem 1	99.695
	CRR073298	Stem 2	88.863
	CRR073299	Stem 3	102.030
	CRR073300	Leaf 1	105.886
	CRR073301	Leaf 2	84.139
	CRR073302	Leaf 3	104.539
	CRR073303	Juvenile bud 1	110.153
	CRR073304	Juvenile bud 2	100.456
	CRR073305	Juvenile bud 3	124.906
	CRR073306	Third green 1	96.646
	CRR073307	Third green 2	71.102
	CRR073308	Third green 3	89.835
	CRR073309	Second white 1	112.523
	CRR073310	Second white 2	89.152
	CRR073311	Second white 3	88.552
	CRR073312	Silver flowering 1	84.904
	CRR073313	Silver flowering 2	88.954
	CRR073314	Silver flowering 3	73.611
	CRR073315	Gold flowering 1	45.037
	CRR073316	Gold flowering 2	76.104
	CRR073317	Gold flowering 3	58.360
	CRR073318	Tawny withering 1	65.387
	CRR073319	Tawny withering 2	45.375
	CRR073320	Tawny withering 3	58.882