Gene detail

Detail information of GWHGAAZE018396

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_009345276.1	1.4196E-161	PREDICTED: ubiquitin fusion degradation protein 1 homolog [Pyrus x bretschneideri]
trEMBL	tr\|G7LAK8\|G7LAK8_MEDTR	5E-159	Ubiquitin fusion degradation 1 protein {ECO:0000313\|EMBL:AET05416.1}
TAIR10	AT2G21270.2	3E-103	ubiquitin fusion degradation 1

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000005	gene	18946767	18949968	+
GWHAAZE00000005	mRNA	18946767	18949968	+
GWHAAZE00000005	exon	18946767	18946844	+
GWHAAZE00000005	exon	18947065	18947089	+
GWHAAZE00000005	exon	18947190	18947222	+
GWHAAZE00000005	exon	18947311	18947432	+
GWHAAZE00000005	exon	18947546	18947676	+
GWHAAZE00000005	exon	18948451	18948587	+
GWHAAZE00000005	exon	18949402	18949664	+
GWHAAZE00000005	exon	18949873	18949968	+
GWHAAZE00000005	CDS	18946767	18946844	+
GWHAAZE00000005	CDS	18947065	18947089	+
GWHAAZE00000005	CDS	18947190	18947222	+
GWHAAZE00000005	CDS	18947311	18947432	+
GWHAAZE00000005	CDS	18947546	18947676	+
GWHAAZE00000005	CDS	18948451	18948587	+
GWHAAZE00000005	CDS	18949402	18949664	+
GWHAAZE00000005	CDS	18949873	18949968	+

Transcript Sequence
>GWHTAAZE018418 TTTTTCGATGGATATGGATACCATGAAACGTCTTTTGAGCAAACATATAGATGCTACCCTACATCTTTTATCGATAAGCCACAACTTGAAAATGGTGATAAAATCATAATGCCTCCCTCAGCCCTGGACCGCCTTGCATCTCTTCAAATTGATTACCCGATGTTGTTTGAGCTTTGCAATGCTGATACTGTGCGAGTTTCTCATTGTGGTGTTCTAGAGTTCATTGCAGAAGAAGGCATGATATACATGCCGTATTGGATGATGGAAAATTTACTGTTACAAGAAGGAGACATTGTGGGAGTGAAAAATGCGACTCTTCCGAAGGGTACATATGTTAAATTGCAACCCCACACAAAGGACTTTTTGGATATATCCAACCCAAAAGCCATCTTGGAGACAACACTGAGGAACTTTTCTTGCTTAACCAAAGGGGATACTATTATGGTAGCATACAACAATAAAAAATATTACATAGATATCATTGAATCGAAGCCTTCTAATGCCATTAATATCATCGAGACAGACTGTCAAGAGGCTCCAGCTGAGGCTGAACCAAAATTTAACCCATTTACGGGAGCAGGGAAACGGTTGGATGGGAAGCCTTTGAAGAACGAGCCCCTGCCAGCTTCCTCCTCCTCTGGATCCAAAGACAACCCATCTGCTAATGTCTCCAATGGTTGTGGACAATCTTCTGCAGGGTCTAGTTCTAGTTCACAAAGTAACACTTGTCAAGCTCAAGGGAAGCTCGTATTTGGCTCAAATGCAAACTGTGACACTGCCAAACAAAAGGAAGCTGCAAAGGAGACTAAACAAGAACAGCCTCAAACGAAAGAAGAGCCAAAATTTCAGCCTTTCACAGGGAAAAAGTACTCATTAAAGGGTTGA

Network for GWHGAAZE018396

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF03152.15	UFD1	12	177	6.20E-74

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K14016	UFD1	Protein processing in endoplasmic reticulum	map04141

Gene Ontology

GO term	Ontology	Name
GO:0006511	biological_process	ubiquitin-dependent protein catabolic process

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	22.029
	SRR3591706	second leaf	6.597
	SRR3591707	mature leaf	11.855
	SRR3591708	Shoot apex	10.140
	SRR3591709	Stem	49.985
	SRR3591710	White floral bud	17.098
	SRR3591711	White flower	23.121
	SRR3591712	Green floral bud	11.273
	SRR3591713	Yellow flower	21.065
SRP173429	SRR8316895	Juvenile bud stage	6.349
	SRR8316896	Juvenile bud stage	8.126
	SRR8316897	Juvenile bud stage	4.646
	SRR8316894	Third green stage	3.589
	SRR8316900	Third green stage	10.947
	SRR8316901	Third green stage	11.826
	SRR8316898	Complete white stage	9.972
	SRR8316899	Complete white stage	13.667
	SRR8316903	Complete white stage	14.212
	SRR8316902	Silver flowering stage	15.573
	SRR8316904	Silver flowering stage	18.050
	SRR8316905	Silver flowering stage	6.902
	SRR8316906	Gold flowering stage	34.483
	SRR8316907	Gold flowering stage	31.465
	SRR8316908	Gold flowering stage	26.113
SRP132670	SRR6706286	Control	5.571
	SRR6706287	Light intensity 50%	5.616
	SRR6706288	Light intensity 20%	6.107
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	10.867
	CNS0095593	Slightly white alabastrum(diploid) 2	12.135
	CNS0095594	Slightly white alabastrum(diploid) 3	13.635
	CNS0095595	Whole white alabastrum(diploid) 2	9.296
	CNS0095596	Whole white alabastrum(diploid) 3	7.909
	CNS0095597	Whole white alabastrum(diploid) 4	8.331
	CNS0095598	Silvery flower (diploied) 1	13.851
	CNS0095599	Silvery flower (diploied) 2	12.417
	CNS0095600	Silvery flower (diploied) 3	8.717
	CNS0095601	Golden flower (diploid) 1	9.929
	CNS0095602	Golden flower (diploid) 2	7.913
	CNS0095603	Golden flower (diploid) 3	7.763
	CNS0095604	Slightly white alabastrum(tetraploid) 1	13.031
	CNS0095605	Slightly white alabastrum(tetraploid) 2	12.538
	CNS0095606	Slightly white alabastrum(tetraploid) 3	8.325
	CNS0095607	Whole white alabastrum(tetraploid) 1	14.396
	CNS0095608	Whole white alabastrum(tetraploid) 2	12.361
	CNS0095609	Whole white alabastrum(tetraploid) 3	9.673
	CNS0095610	Silvery flower (tetraploid) 1	18.369
	CNS0095611	Silvery flower (tetraploid) 2	11.600
	CNS0095612	Silvery flower (tetraploid) 3	26.389
	CNS0095613	Golden flower (tetraploid) 1	21.690
	CNS0095614	Golden flower (tetraploid) 2	19.300
	CNS0095615	Golden flower (tetraploid) 3	20.727
CRA001975	CRR073297	Stem 1	5.244
	CRR073298	Stem 2	3.612
	CRR073299	Stem 3	1.547
	CRR073300	Leaf 1	7.535
	CRR073301	Leaf 2	5.782
	CRR073302	Leaf 3	1.032
	CRR073303	Juvenile bud 1	1.210
	CRR073304	Juvenile bud 2	0.876
	CRR073305	Juvenile bud 3	2.361
	CRR073306	Third green 1	1.186
	CRR073307	Third green 2	1.253
	CRR073308	Third green 3	1.414
	CRR073309	Second white 1	0.420
	CRR073310	Second white 2	4.050
	CRR073311	Second white 3	2.658
	CRR073312	Silver flowering 1	1.073
	CRR073313	Silver flowering 2	1.588
	CRR073314	Silver flowering 3	1.327
	CRR073315	Gold flowering 1	0.508
	CRR073316	Gold flowering 2	3.483
	CRR073317	Gold flowering 3	0.071
	CRR073318	Tawny withering 1	4.394
	CRR073319	Tawny withering 2	9.970
	CRR073320	Tawny withering 3	6.583