Detail information of GWHGAAZE018391


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrADV59380.11.2634E-136GAGA-binding transcriptional activator [Helianthus annuus]
Swissprottr|Q8S8C6|BPC4_ARATH2E-118Protein BASIC PENTACYSTEINE4
trEMBLtr|H1ZN80|H1ZN80_HELAN5E-137GAGA-binding transcriptional activator {ECO:0000313|EMBL:ADV59380.1}
TAIR10AT2G21240.21E-95basic pentacysteine 4

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000005gene1886762918868964-
GWHAAZE00000005mRNA1886762918868964-
GWHAAZE00000005exon1886893518868964-
GWHAAZE00000005exon1886762918868438-
GWHAAZE00000005CDS1886893518868964-
GWHAAZE00000005CDS1886762918868438-
Transcript Sequence

Network for GWHGAAZE018391

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF06217.13GAGA_bind82791.70E-94
Protein Sequence

Gene family

Gene familysubfamily
Transcription Factors FamilyBBR-BPC

KEGG pathway

KO Enzyme pathway mapID
--------

Gene Ontology

GO term OntologyName

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf42.218
SRR3591706second leaf35.321
SRR3591707mature leaf47.346
SRR3591708Shoot apex48.767
SRR3591709Stem42.802
SRR3591710White floral bud41.392
SRR3591711White flower50.229
SRR3591712Green floral bud41.503
SRR3591713Yellow flower29.135
SRP173429 SRR8316895Juvenile bud stage 24.588
SRR8316896Juvenile bud stage 30.356
SRR8316897Juvenile bud stage 13.688
SRR8316894Third green stage 10.699
SRR8316900Third green stage 39.031
SRR8316901Third green stage 30.660
SRR8316898Complete white stage 20.920
SRR8316899Complete white stage 63.063
SRR8316903Complete white stage 27.610
SRR8316902Silver flowering stage15.309
SRR8316904Silver flowering stage18.783
SRR8316905Silver flowering stage11.795
SRR8316906Gold flowering stage 29.940
SRR8316907Gold flowering stage 34.225
SRR8316908Gold flowering stage 35.616
SRP132670SRR6706286Control50.098
SRR6706287Light intensity 50%52.566
SRR6706288Light intensity 20%52.305
CNP0000432CNS0095592Slightly white alabastrum(diploid) 127.377
CNS0095593Slightly white alabastrum(diploid) 235.931
CNS0095594Slightly white alabastrum(diploid) 324.714
CNS0095595Whole white alabastrum(diploid) 231.388
CNS0095596Whole white alabastrum(diploid) 320.842
CNS0095597Whole white alabastrum(diploid) 422.102
CNS0095598Silvery flower (diploied) 146.803
CNS0095599Silvery flower (diploied) 239.250
CNS0095600Silvery flower (diploied) 350.659
CNS0095601Golden flower (diploid) 135.337
CNS0095602Golden flower (diploid) 241.974
CNS0095603Golden flower (diploid) 343.332
CNS0095604Slightly white alabastrum(tetraploid) 137.026
CNS0095605Slightly white alabastrum(tetraploid) 234.710
CNS0095606Slightly white alabastrum(tetraploid) 362.291
CNS0095607Whole white alabastrum(tetraploid) 127.470
CNS0095608Whole white alabastrum(tetraploid) 223.470
CNS0095609Whole white alabastrum(tetraploid) 338.956
CNS0095610Silvery flower (tetraploid) 150.443
CNS0095611Silvery flower (tetraploid) 255.608
CNS0095612Silvery flower (tetraploid) 337.281
CNS0095613Golden flower (tetraploid) 133.500
CNS0095614Golden flower (tetraploid) 248.264
CNS0095615Golden flower (tetraploid) 341.547
CRA001975CRR073297Stem 157.002
CRR073298Stem 248.672
CRR073299Stem 359.461
CRR073300Leaf 159.193
CRR073301Leaf 256.816
CRR073302Leaf 345.580
CRR073303Juvenile bud 158.756
CRR073304Juvenile bud 240.504
CRR073305Juvenile bud 362.845
CRR073306Third green 124.554
CRR073307Third green 219.097
CRR073308Third green 321.990
CRR073309Second white 122.204
CRR073310Second white 223.016
CRR073311Second white 320.479
CRR073312Silver flowering 115.548
CRR073313Silver flowering 212.764
CRR073314Silver flowering 313.812
CRR073315Gold flowering 127.248
CRR073316Gold flowering 231.144
CRR073317Gold flowering 329.765
CRR073318Tawny withering 161.443
CRR073319Tawny withering 244.480
CRR073320Tawny withering 356.773