Gene detail

Detail information of GWHGAAZE018366

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	KDP27595.1	6.0265E-141	hypothetical protein JCGZ_19600 [Jatropha curcas]
Swissprot	tr\|Q9T0I8\|MTN1_ARATH	7E-120	5'-methylthioadenosine/S-adenosylhomocysteine nucleosidase 1
trEMBL	tr\|A0A067K5R2\|A0A067K5R2_JATCU	2E-141	Uncharacterized protein {ECO:0000313\|EMBL:KDP27595.1}
TAIR10	AT4G38800.1	2E-88	methylthioadenosine nucleosidase 1

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000005	gene	18566108	18571236	-
GWHAAZE00000005	mRNA	18566108	18571236	-
GWHAAZE00000005	exon	18571140	18571236	-
GWHAAZE00000005	exon	18570959	18571022	-
GWHAAZE00000005	exon	18569214	18569305	-
GWHAAZE00000005	exon	18568716	18568822	-
GWHAAZE00000005	exon	18568271	18568345	-
GWHAAZE00000005	exon	18567766	18567840	-
GWHAAZE00000005	exon	18567427	18567519	-
GWHAAZE00000005	exon	18566108	18566448	-
GWHAAZE00000005	CDS	18571140	18571236	-
GWHAAZE00000005	CDS	18570959	18571022	-
GWHAAZE00000005	CDS	18569214	18569305	-
GWHAAZE00000005	CDS	18568716	18568822	-
GWHAAZE00000005	CDS	18568271	18568345	-
GWHAAZE00000005	CDS	18567766	18567840	-
GWHAAZE00000005	CDS	18567427	18567519	-
GWHAAZE00000005	CDS	18566251	18566448	-
GWHAAZE00000005	three_prime_UTR	18566108	18566250	-

Transcript Sequence
>GWHTAAZE018388 ATGGTTCCTCCTGGTGATGAAAGACCACCGCAAGTTGCAGAAGCAAAGGAGTGCATGGCTTCCAAAGCCCCCATCTCAACCATCGTTATCATCATTGCTATGCAGACTGAAGCGCTTCCTCTTGTCAACAAACTCAACCTTTCTCGGGACCTCCATTCTCAGTTCCCAGAGGGAGTTCCATGGGTTCGATATCATGGTAGTTACAATAATTTAAATATTAATATTTTATGGCCAGGAAAGGACACTGTTTTGGGGGTTGACAATGTAGGCACGGTTTCGGCATCGCTTGTGACTTATGCTTCCATTCAAGCACTAAAACCAGACCTTATCATAAATGCTGGCACTGCGGGTGGCTTTAAGGCCAAAGGAGCTAGCATTGGTGATGTGTACCTAGCATCGGAAACTTCTTTTTATGATAGAAGAATACCTCTCCCTATTAAACAACTTTATGGAATTTGTTCGCGGCAGGCTTTCTCAACACCAAACCTTTTGAAGGAGCTTAACCTGAAGGTGGGTAAATTGTCAACTGGCAACTCTTTAGATATGTGCCCACAAGATGAAGCTTCAATCATTGCAAATGATGCAGTAGTTAAAGACATGGAGGGGGCAGCTGTTGCTTACGTGGCAAATCTTTTAAAGGTCCCTACAATCTTCATGAAAGCAGTGACTGACATTGTGGATGGTGACAAGCCAACCGCCGAGGAATTTTTGCAAAATTTAGCACCAGTGAGTGCTGCACTTGGTGAAGCAGTCACCCGAGTTGTTGATTTCATTGAGGGGAAGTGCCTTTCTGAACTGTGAACATTTTTTTACCCGAGGAGATATAACAACTTTTGATCTAGGCTAAATGCCATATTCGATTGCATATACAATTTAGACGATTACTATTCTTTATGATTTGAATAGGTACATCAATGAATGATAACATTGAGTAGCCACAAGGT

Network for GWHGAAZE018366

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF01048.21	PNP_UDP_1	27	254	2.90E-23

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K01244	MTN	Metabolic pathways	map01100
K01244	MTN	Cysteine and methionine metabolism	map00270

Gene Ontology

GO term	Ontology	Name
GO:0009116	biological_process	nucleoside metabolic process
GO:0003824	molecular_function	catalytic activity

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	60.536
	SRR3591706	second leaf	39.577
	SRR3591707	mature leaf	46.951
	SRR3591708	Shoot apex	61.143
	SRR3591709	Stem	60.038
	SRR3591710	White floral bud	61.141
	SRR3591711	White flower	68.690
	SRR3591712	Green floral bud	59.616
	SRR3591713	Yellow flower	69.214
SRP173429	SRR8316895	Juvenile bud stage	34.907
	SRR8316896	Juvenile bud stage	53.640
	SRR8316897	Juvenile bud stage	21.936
	SRR8316894	Third green stage	20.244
	SRR8316900	Third green stage	68.207
	SRR8316901	Third green stage	66.882
	SRR8316898	Complete white stage	33.147
	SRR8316899	Complete white stage	89.793
	SRR8316903	Complete white stage	43.061
	SRR8316902	Silver flowering stage	27.139
	SRR8316904	Silver flowering stage	35.541
	SRR8316905	Silver flowering stage	18.731
	SRR8316906	Gold flowering stage	69.640
	SRR8316907	Gold flowering stage	62.329
	SRR8316908	Gold flowering stage	66.875
SRP132670	SRR6706286	Control	63.551
	SRR6706287	Light intensity 50%	66.761
	SRR6706288	Light intensity 20%	66.004
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	44.491
	CNS0095593	Slightly white alabastrum(diploid) 2	46.647
	CNS0095594	Slightly white alabastrum(diploid) 3	44.146
	CNS0095595	Whole white alabastrum(diploid) 2	43.007
	CNS0095596	Whole white alabastrum(diploid) 3	40.537
	CNS0095597	Whole white alabastrum(diploid) 4	39.225
	CNS0095598	Silvery flower (diploied) 1	39.870
	CNS0095599	Silvery flower (diploied) 2	44.353
	CNS0095600	Silvery flower (diploied) 3	45.710
	CNS0095601	Golden flower (diploid) 1	33.893
	CNS0095602	Golden flower (diploid) 2	41.545
	CNS0095603	Golden flower (diploid) 3	39.613
	CNS0095604	Slightly white alabastrum(tetraploid) 1	50.823
	CNS0095605	Slightly white alabastrum(tetraploid) 2	40.889
	CNS0095606	Slightly white alabastrum(tetraploid) 3	54.752
	CNS0095607	Whole white alabastrum(tetraploid) 1	29.057
	CNS0095608	Whole white alabastrum(tetraploid) 2	30.571
	CNS0095609	Whole white alabastrum(tetraploid) 3	47.423
	CNS0095610	Silvery flower (tetraploid) 1	55.707
	CNS0095611	Silvery flower (tetraploid) 2	50.555
	CNS0095612	Silvery flower (tetraploid) 3	62.511
	CNS0095613	Golden flower (tetraploid) 1	40.735
	CNS0095614	Golden flower (tetraploid) 2	52.127
	CNS0095615	Golden flower (tetraploid) 3	55.658
CRA001975	CRR073297	Stem 1	49.717
	CRR073298	Stem 2	46.592
	CRR073299	Stem 3	47.103
	CRR073300	Leaf 1	56.869
	CRR073301	Leaf 2	55.782
	CRR073302	Leaf 3	58.760
	CRR073303	Juvenile bud 1	52.173
	CRR073304	Juvenile bud 2	49.406
	CRR073305	Juvenile bud 3	39.382
	CRR073306	Third green 1	34.111
	CRR073307	Third green 2	37.736
	CRR073308	Third green 3	36.849
	CRR073309	Second white 1	37.445
	CRR073310	Second white 2	38.834
	CRR073311	Second white 3	22.434
	CRR073312	Silver flowering 1	35.977
	CRR073313	Silver flowering 2	35.457
	CRR073314	Silver flowering 3	23.392
	CRR073315	Gold flowering 1	42.647
	CRR073316	Gold flowering 2	46.970
	CRR073317	Gold flowering 3	30.540
	CRR073318	Tawny withering 1	43.841
	CRR073319	Tawny withering 2	43.919
	CRR073320	Tawny withering 3	34.799