Gene detail

Detail information of GWHGAAZE018361

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_004230930.1	4.1999E-141	PREDICTED: transcription factor bHLH121 [Solanum lycopersicum]
Swissprot	tr\|Q9LT23\|BH121_ARATH	2E-91	Transcription factor bHLH121
trEMBL	tr\|K4B3X6\|K4B3X6_SOLLC	2E-141	Uncharacterized protein {ECO:0000313\|EnsemblPlants:Solyc01g111130.2.1}
TAIR10	AT3G19860.2	5E-75	basic helix-loop-helix (bHLH) DNA-binding superfamily protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000005	gene	18509662	18512749	+
GWHAAZE00000005	mRNA	18509662	18512749	+
GWHAAZE00000005	exon	18509662	18509687	+
GWHAAZE00000005	exon	18509779	18509894	+
GWHAAZE00000005	exon	18511580	18511707	+
GWHAAZE00000005	exon	18511791	18512273	+
GWHAAZE00000005	exon	18512591	18512749	+
GWHAAZE00000005	CDS	18509662	18509687	+
GWHAAZE00000005	CDS	18509779	18509894	+
GWHAAZE00000005	CDS	18511580	18511707	+
GWHAAZE00000005	CDS	18511791	18512273	+
GWHAAZE00000005	CDS	18512591	18512749	+

Transcript Sequence
>GWHTAAZE018383 ATGATGGTTTCCTGTTGCACTTTATTGCCAGAAGCAGAACTCAAAGGATCCATTGCTTCAAGAAAAGTTCAGAAGGCTGACCGTGAAAAGTTGAGGAGAGATCGGCTAAACGAGCAGTTTACGGAATTGGGAAGCACGCTTGATGCTGATAGACCTAAAAATGACAAAGCATCCATTCTGGTTGATACAATCCAAGTGCTGAAAGATTTGACTGCTCAGGTCAACAGACTAAAAGCAGAATACGCTACTCTCACTGAGGAATCTCGCGAGTTGACCCAAGAGAAGAATGATCTTCGAGAAGAGAAGTCATCCCTTAAATCTGATATCGAGAACCTTAATCTTCAATACCAGCAGAGACTTAGGGCCACATATCCATGGGGTATGGATCATTCGGTTATGATGCACCCACCAACATATCCGTTCCCAGTGCCCCTACCAATACCTCAAGGACCAATGCCGATGCACCCATCTATGCAGCCATATCCCTTTTTCGCAAATCAAAATCCTGCTGTTGTTCCCAACCCTTGTTCAACTTTTGTGCCGTATCTAACTCCTAATACCATGATGGAACAGCAGTCCACCCAGTATATATCTCCGGCTGTACAGCCAGGCAGTAGGTCCCACAGTTTGAGGAAACAAGATTCGAGGAACAAGCCGTCGGATCAAGGGGAGAGCAAGACTGGAAAAACTGACGAATCTATTGAAGTTGCAACAGACCTAGAGCTCAAGACACCAGGATCGACTGCAGATCAGGATTCTTCACTGGGGCAGAGGAAATCCAGGAAAATGACGAGGAAGGAAAATTCAGAGGGTAATTCTTCAAGCAGGTGTTCGTCATCTCGTACTGTACAAGCTAGCTCATCGAATAGTGTAGTTGGTGGCACTAGGGACGATGATTTAGAGAGGGGATAA

Network for GWHGAAZE018361

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00010.27	HLH	21	70	9.90E-09

Protein Sequence

Gene family

Gene family	subfamily
Transcription Factors Family	bHLH

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0046983	molecular_function	protein dimerization activity

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	67.220
	SRR3591706	second leaf	39.997
	SRR3591707	mature leaf	42.963
	SRR3591708	Shoot apex	56.102
	SRR3591709	Stem	82.445
	SRR3591710	White floral bud	57.062
	SRR3591711	White flower	54.595
	SRR3591712	Green floral bud	48.321
	SRR3591713	Yellow flower	47.210
SRP173429	SRR8316895	Juvenile bud stage	26.235
	SRR8316896	Juvenile bud stage	36.262
	SRR8316897	Juvenile bud stage	17.983
	SRR8316894	Third green stage	14.172
	SRR8316900	Third green stage	36.242
	SRR8316901	Third green stage	38.618
	SRR8316898	Complete white stage	17.322
	SRR8316899	Complete white stage	47.344
	SRR8316903	Complete white stage	33.090
	SRR8316902	Silver flowering stage	22.079
	SRR8316904	Silver flowering stage	24.635
	SRR8316905	Silver flowering stage	12.058
	SRR8316906	Gold flowering stage	32.700
	SRR8316907	Gold flowering stage	25.406
	SRR8316908	Gold flowering stage	34.522
SRP132670	SRR6706286	Control	44.749
	SRR6706287	Light intensity 50%	45.241
	SRR6706288	Light intensity 20%	44.783
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	36.423
	CNS0095593	Slightly white alabastrum(diploid) 2	37.577
	CNS0095594	Slightly white alabastrum(diploid) 3	34.118
	CNS0095595	Whole white alabastrum(diploid) 2	29.462
	CNS0095596	Whole white alabastrum(diploid) 3	23.651
	CNS0095597	Whole white alabastrum(diploid) 4	32.256
	CNS0095598	Silvery flower (diploied) 1	35.586
	CNS0095599	Silvery flower (diploied) 2	33.903
	CNS0095600	Silvery flower (diploied) 3	33.952
	CNS0095601	Golden flower (diploid) 1	38.007
	CNS0095602	Golden flower (diploid) 2	41.562
	CNS0095603	Golden flower (diploid) 3	39.113
	CNS0095604	Slightly white alabastrum(tetraploid) 1	31.706
	CNS0095605	Slightly white alabastrum(tetraploid) 2	30.358
	CNS0095606	Slightly white alabastrum(tetraploid) 3	38.228
	CNS0095607	Whole white alabastrum(tetraploid) 1	30.054
	CNS0095608	Whole white alabastrum(tetraploid) 2	27.116
	CNS0095609	Whole white alabastrum(tetraploid) 3	32.724
	CNS0095610	Silvery flower (tetraploid) 1	32.762
	CNS0095611	Silvery flower (tetraploid) 2	34.157
	CNS0095612	Silvery flower (tetraploid) 3	37.359
	CNS0095613	Golden flower (tetraploid) 1	25.456
	CNS0095614	Golden flower (tetraploid) 2	25.213
	CNS0095615	Golden flower (tetraploid) 3	32.213
CRA001975	CRR073297	Stem 1	70.088
	CRR073298	Stem 2	59.971
	CRR073299	Stem 3	46.915
	CRR073300	Leaf 1	68.985
	CRR073301	Leaf 2	69.234
	CRR073302	Leaf 3	46.262
	CRR073303	Juvenile bud 1	46.115
	CRR073304	Juvenile bud 2	36.417
	CRR073305	Juvenile bud 3	47.820
	CRR073306	Third green 1	32.219
	CRR073307	Third green 2	27.480
	CRR073308	Third green 3	30.886
	CRR073309	Second white 1	19.494
	CRR073310	Second white 2	37.909
	CRR073311	Second white 3	29.317
	CRR073312	Silver flowering 1	22.435
	CRR073313	Silver flowering 2	18.023
	CRR073314	Silver flowering 3	22.898
	CRR073315	Gold flowering 1	55.619
	CRR073316	Gold flowering 2	61.298
	CRR073317	Gold flowering 3	38.271
	CRR073318	Tawny withering 1	56.785
	CRR073319	Tawny withering 2	62.409
	CRR073320	Tawny withering 3	53.412