Gene detail

Detail information of GWHGAAZE018344

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_011088581.1	7.2325E-138	PREDICTED: auxin transporter-like protein 5 [Sesamum indicum]
Swissprot	tr\|Q8L883\|LAX5_MEDTR	2E-135	Auxin transporter-like protein 5
trEMBL	tr\|A0A022RD33\|A0A022RD33_ERYGU	4E-137	Uncharacterized protein {ECO:0000313\|EMBL:EYU37934.1}
TAIR10	AT2G21050.1	3E-82	like AUXIN RESISTANT 2

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000005	gene	18269071	18270794	+
GWHAAZE00000005	mRNA	18269071	18270794	+
GWHAAZE00000005	exon	18269071	18269250	+
GWHAAZE00000005	exon	18269386	18269643	+
GWHAAZE00000005	exon	18270456	18270794	+
GWHAAZE00000005	CDS	18269071	18269250	+
GWHAAZE00000005	CDS	18269386	18269643	+
GWHAAZE00000005	CDS	18270456	18270794	+

Transcript Sequence
>GWHTAAZE018366 ATGCACGCAATGTGGAAGCCACAGAAGTTTAAGGCCATATACTTACTGGCTACACTCTATGTGTTGACACTGACAATTCCCTCGGCAGCTGCTGTTTATTGGGCATTCGGAGACATGCTTCTTAATCACTCCAATGCTTTCGCTCTCTTCCCCAGATCTCCCTTGCGAGACATGGCTGTCTTTATAACATTTGGGTTTGCATGCACGCCATTATATTTTGTGTGGGAGAAGGCAATAGGGATGCACGAGTGCAAGAGCATGTGTAAGCGTGCGGCAGCGCGATTGCCTGTAGTCATCCCCATTTGGTTTCTGGCCATCATCTTCCCTTTCTTTGGTCCCATCAATTCCACCGTTGGATCACTTCTTGTCAGCTTCACTGTGTACATTATTCCCGCCCTCGCGTACATCTTCACCTTCAAATCAGCTGCTGCTCGAGAGAATGCGGTGGAGCAACCACCGAAATACTTTGGAGGGTGGGCCGGTGCGTACACGATCAATGTGTTTGTTGTTGTGTGGGTCCTTGTGGTTGGGTTTGGATTCGGTGGATGGGCAAGCATGACAAATTTCATACGCCAGATTGACACCTTTGGCCTCTTTACCAAGTGTTATCAATGCCCTCCACAACAACTTCCATCATCGCCGCACCAACTTAACTCCACCGCTCCTCTTCCTTCTCCGGCAAACATCCACCACCACCTCTGAACCTTCCACCACCACCTCCACTTAACAGCCATTACCCGTAGCTCAAAAGCTAGCCATGAACATAATTGGAACTGA

Network for GWHGAAZE018344

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF01490.19	Aa_trans	1	170	1.10E-21

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K13946	AUX1, LAX	Plant hormone signal transduction	map04075

Gene Ontology

GO term	Ontology	Name

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	50.523
	SRR3591706	second leaf	8.322
	SRR3591707	mature leaf	0.423
	SRR3591708	Shoot apex	58.825
	SRR3591709	Stem	44.336
	SRR3591710	White floral bud	1.134
	SRR3591711	White flower	0.726
	SRR3591712	Green floral bud	0.728
	SRR3591713	Yellow flower	0.000
SRP173429	SRR8316895	Juvenile bud stage	6.022
	SRR8316896	Juvenile bud stage	7.385
	SRR8316897	Juvenile bud stage	4.396
	SRR8316894	Third green stage	1.150
	SRR8316900	Third green stage	0.209
	SRR8316901	Third green stage	1.138
	SRR8316898	Complete white stage	0.350
	SRR8316899	Complete white stage	2.648
	SRR8316903	Complete white stage	0.408
	SRR8316902	Silver flowering stage	0.000
	SRR8316904	Silver flowering stage	0.083
	SRR8316905	Silver flowering stage	0.000
	SRR8316906	Gold flowering stage	0.000
	SRR8316907	Gold flowering stage	0.000
	SRR8316908	Gold flowering stage	0.000
SRP132670	SRR6706286	Control	0.773
	SRR6706287	Light intensity 50%	0.790
	SRR6706288	Light intensity 20%	1.149
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	9.974
	CNS0095593	Slightly white alabastrum(diploid) 2	5.704
	CNS0095594	Slightly white alabastrum(diploid) 3	7.000
	CNS0095595	Whole white alabastrum(diploid) 2	3.961
	CNS0095596	Whole white alabastrum(diploid) 3	0.000
	CNS0095597	Whole white alabastrum(diploid) 4	2.221
	CNS0095598	Silvery flower (diploied) 1	1.993
	CNS0095599	Silvery flower (diploied) 2	3.426
	CNS0095600	Silvery flower (diploied) 3	0.686
	CNS0095601	Golden flower (diploid) 1	1.946
	CNS0095602	Golden flower (diploid) 2	0.596
	CNS0095603	Golden flower (diploid) 3	0.709
	CNS0095604	Slightly white alabastrum(tetraploid) 1	3.942
	CNS0095605	Slightly white alabastrum(tetraploid) 2	3.653
	CNS0095606	Slightly white alabastrum(tetraploid) 3	10.157
	CNS0095607	Whole white alabastrum(tetraploid) 1	0.289
	CNS0095608	Whole white alabastrum(tetraploid) 2	0.068
	CNS0095609	Whole white alabastrum(tetraploid) 3	0.037
	CNS0095610	Silvery flower (tetraploid) 1	0.000
	CNS0095611	Silvery flower (tetraploid) 2	0.205
	CNS0095612	Silvery flower (tetraploid) 3	0.076
	CNS0095613	Golden flower (tetraploid) 1	0.000
	CNS0095614	Golden flower (tetraploid) 2	0.000
	CNS0095615	Golden flower (tetraploid) 3	0.000
CRA001975	CRR073297	Stem 1	10.926
	CRR073298	Stem 2	7.825
	CRR073299	Stem 3	21.421
	CRR073300	Leaf 1	1.053
	CRR073301	Leaf 2	1.372
	CRR073302	Leaf 3	1.316
	CRR073303	Juvenile bud 1	0.639
	CRR073304	Juvenile bud 2	0.789
	CRR073305	Juvenile bud 3	1.466
	CRR073306	Third green 1	0.000
	CRR073307	Third green 2	0.000
	CRR073308	Third green 3	0.000
	CRR073309	Second white 1	0.000
	CRR073310	Second white 2	0.000
	CRR073311	Second white 3	0.000
	CRR073312	Silver flowering 1	0.000
	CRR073313	Silver flowering 2	0.000
	CRR073314	Silver flowering 3	0.000
	CRR073315	Gold flowering 1	0.132
	CRR073316	Gold flowering 2	0.321
	CRR073317	Gold flowering 3	0.380
	CRR073318	Tawny withering 1	41.461
	CRR073319	Tawny withering 2	27.268
	CRR073320	Tawny withering 3	41.598