Gene detail

Detail information of GWHGAAZE018335

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_010090326.1	2.85024E-95	Actin-depolymerizing factor 5 [Morus notabilis]
Swissprot	tr\|Q9ZNT3\|ADF5_ARATH	8E-88	Actin-depolymerizing factor 5
trEMBL	tr\|W9R6W2\|W9R6W2_9ROSA	1E-95	Actin-depolymerizing factor 5 {ECO:0000313\|EMBL:EXB39296.1}
TAIR10	AT2G16700.1	4E-69	actin depolymerizing factor 5

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000005	gene	18150806	18152705	-
GWHAAZE00000005	mRNA	18150806	18152705	-
GWHAAZE00000005	exon	18152685	18152705	-
GWHAAZE00000005	exon	18152315	18152574	-
GWHAAZE00000005	exon	18150806	18151256	-
GWHAAZE00000005	CDS	18152685	18152705	-
GWHAAZE00000005	CDS	18152315	18152574	-
GWHAAZE00000005	CDS	18151106	18151256	-
GWHAAZE00000005	three_prime_UTR	18150806	18151105	-

Transcript Sequence
>GWHTAAZE018357 ATGGCCATGGCTTTCAAGATGGCGACGACGGGTATGTGGGTAACGGACGAGTGTAAAAATTCGTTCATGGAAATGAAATGGAAGAAGGTGCATAGGTACATTGTGTTCAAAATTGATGAAAAATCTCGGTTGTTGACGGTCGATAAGGTGGGCAGTTCCGGAGAAAGCTACGACGACCTTGCGGCTTCTCTGCCGAACGATGATTGCCGATACGCTGTCTTCGATTTCGATTTCGTCACCGTGGATAACTGCCGCAAAAGCAAGATATTCTTTATCGCCTGGGCTCCAGCAGCATCAAGAATAAGAGAGAAGATATTGTATGCGACCTCAAAAGATGGATTGAGGAGAGTGCTAGATGGGATCCACTATGAAGTTCAGGCCACAGATCCAACTGAGATGGGCTTCGATGTCATTACGGACCGTGCCAAATAATTGAGATTTGTACATCAATATATCTTCTAATTATAATTAACCAAATCCTCTGATTTGGCATGCATCTTTTTTCTTTTTCTTTTTTTAATCTAATAACTCCACCGCCAGAGATGCTTTCTTCTTGCTACTATCACCTTTTCTTCCCTGTTTTCTAAAATTTGGGAGGACTGAGACTGATGTACAAATTAATCTACTAGTTTGTAATAACTTTTATGTTCTGCTTTGCTGCTAATTTAACGACAAAAAAAAGGGGCACCTTTCCATGCTTTTTCTCTTTTAATTTATTCCTTAATTCATGAC

Network for GWHGAAZE018335

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00241.21	Cofilin_ADF	18	140	1.00E-33

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K05765	CFL	Regulation of actin cytoskeleton	map04810
		Fc gamma R-mediated phagocytosis	map04666
		Axon guidance	map04360

Gene Ontology

GO term	Ontology	Name
GO:0030042	biological_process	actin filament depolymerization
GO:0015629	cellular_component	actin cytoskeleton
GO:0003779	molecular_function	actin binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	15.950
	SRR3591706	second leaf	1.094
	SRR3591707	mature leaf	0.156
	SRR3591708	Shoot apex	4.061
	SRR3591709	Stem	11.898
	SRR3591710	White floral bud	0.788
	SRR3591711	White flower	0.699
	SRR3591712	Green floral bud	2.480
	SRR3591713	Yellow flower	0.000
SRP173429	SRR8316895	Juvenile bud stage	17.673
	SRR8316896	Juvenile bud stage	24.867
	SRR8316897	Juvenile bud stage	5.714
	SRR8316894	Third green stage	4.592
	SRR8316900	Third green stage	8.075
	SRR8316901	Third green stage	9.497
	SRR8316898	Complete white stage	0.140
	SRR8316899	Complete white stage	3.017
	SRR8316903	Complete white stage	0.519
	SRR8316902	Silver flowering stage	0.083
	SRR8316904	Silver flowering stage	0.185
	SRR8316905	Silver flowering stage	0.000
	SRR8316906	Gold flowering stage	0.000
	SRR8316907	Gold flowering stage	0.000
	SRR8316908	Gold flowering stage	0.000
SRP132670	SRR6706286	Control	4.677
	SRR6706287	Light intensity 50%	3.996
	SRR6706288	Light intensity 20%	3.209
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	22.953
	CNS0095593	Slightly white alabastrum(diploid) 2	9.033
	CNS0095594	Slightly white alabastrum(diploid) 3	27.353
	CNS0095595	Whole white alabastrum(diploid) 2	8.561
	CNS0095596	Whole white alabastrum(diploid) 3	8.205
	CNS0095597	Whole white alabastrum(diploid) 4	2.362
	CNS0095598	Silvery flower (diploied) 1	2.399
	CNS0095599	Silvery flower (diploied) 2	5.439
	CNS0095600	Silvery flower (diploied) 3	1.202
	CNS0095601	Golden flower (diploid) 1	3.955
	CNS0095602	Golden flower (diploid) 2	3.644
	CNS0095603	Golden flower (diploid) 3	3.093
	CNS0095604	Slightly white alabastrum(tetraploid) 1	9.695
	CNS0095605	Slightly white alabastrum(tetraploid) 2	8.342
	CNS0095606	Slightly white alabastrum(tetraploid) 3	0.782
	CNS0095607	Whole white alabastrum(tetraploid) 1	3.856
	CNS0095608	Whole white alabastrum(tetraploid) 2	2.835
	CNS0095609	Whole white alabastrum(tetraploid) 3	2.564
	CNS0095610	Silvery flower (tetraploid) 1	0.086
	CNS0095611	Silvery flower (tetraploid) 2	0.243
	CNS0095612	Silvery flower (tetraploid) 3	0.000
	CNS0095613	Golden flower (tetraploid) 1	0.000
	CNS0095614	Golden flower (tetraploid) 2	0.080
	CNS0095615	Golden flower (tetraploid) 3	0.000
CRA001975	CRR073297	Stem 1	14.499
	CRR073298	Stem 2	9.120
	CRR073299	Stem 3	13.447
	CRR073300	Leaf 1	3.082
	CRR073301	Leaf 2	4.556
	CRR073302	Leaf 3	4.666
	CRR073303	Juvenile bud 1	1.416
	CRR073304	Juvenile bud 2	0.968
	CRR073305	Juvenile bud 3	1.735
	CRR073306	Third green 1	0.111
	CRR073307	Third green 2	0.082
	CRR073308	Third green 3	1.057
	CRR073309	Second white 1	0.000
	CRR073310	Second white 2	0.000
	CRR073311	Second white 3	0.000
	CRR073312	Silver flowering 1	0.000
	CRR073313	Silver flowering 2	0.000
	CRR073314	Silver flowering 3	0.000
	CRR073315	Gold flowering 1	0.500
	CRR073316	Gold flowering 2	0.301
	CRR073317	Gold flowering 3	0.231
	CRR073318	Tawny withering 1	14.290
	CRR073319	Tawny withering 2	5.476
	CRR073320	Tawny withering 3	29.232