Detail information of GWHGAAZE018322


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrXP_002278595.11.1471E-130PREDICTED: rac-like GTP-binding protein 5 [Vitis vinifera]
Swissprottr|Q38912|RAC3_ARATH6E-131Rac-like GTP-binding protein ARAC3 (Precursor)
trEMBLtr|A5AP72|A5AP72_VITVI4E-131Putative uncharacterized protein {ECO:0000313|EMBL:CAN73627.1}
TAIR10AT1G75840.13E-97RAC-like GTP binding protein 5

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000005gene1792953117932252-
GWHAAZE00000005mRNA1792953117932252-
GWHAAZE00000005exon1792953117929635-
GWHAAZE00000005exon1792975717929822-
GWHAAZE00000005exon1792994817930012-
GWHAAZE00000005exon1793071817930781-
GWHAAZE00000005exon1793097317931082-
GWHAAZE00000005exon1793116917931256-
GWHAAZE00000005exon1793215417932252-
GWHAAZE00000005CDS1793215417932252-
GWHAAZE00000005CDS1793116917931256-
GWHAAZE00000005CDS1793097317931082-
GWHAAZE00000005CDS1793071817930781-
GWHAAZE00000005CDS1792994817930012-
GWHAAZE00000005CDS1792975717929822-
GWHAAZE00000005CDS1792953117929635-
Transcript Sequence

Network for GWHGAAZE018322

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF00071.23Ras81782.90E-51
Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
K04392RAC1 Ras signaling pathway map04014
Rap1 signaling pathwaymap04015
MAPK signaling pathwaymap04010
MAPK signaling pathway - flymap04013
Wnt signaling pathwaymap04310
VEGF signaling pathwaymap04370
Sphingolipid signaling pathwaymap04071
cAMP signaling pathwaymap04024
PI3K-Akt signaling pathwaymap04151
Phagosomemap04145
Focal adhesionmap04510
Adherens junctionmap04520
Tight junctionmap04530
Regulation of actin cytoskeletonmap04810
Toll-like receptor signaling pathwaymap04620
Natural killer cell mediated cytotoxicitymap04650
B cell receptor signaling pathwaymap04662
Fc epsilon RI signaling pathwaymap04664
Fc gamma R-mediated phagocytosismap04666
Leukocyte transendothelial migrationmap04670
Chemokine signaling pathwaymap04062
Pancreatic secretionmap04972
Neurotrophin signaling pathwaymap04722
Axon guidancemap04360
Axon regenerationmap04361
Osteoclast differentiationmap04380

Gene Ontology

GO term OntologyName
GO:0007264biological_processsmall GTPase mediated signal transduction
GO:0005525molecular_functionGTP binding
GO:0003924molecular_functionGTPase activity

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf150.082
SRR3591706second leaf133.400
SRR3591707mature leaf125.580
SRR3591708Shoot apex121.141
SRR3591709Stem119.554
SRR3591710White floral bud62.363
SRR3591711White flower59.927
SRR3591712Green floral bud55.615
SRR3591713Yellow flower20.107
SRP173429 SRR8316895Juvenile bud stage 61.284
SRR8316896Juvenile bud stage 66.786
SRR8316897Juvenile bud stage 31.048
SRR8316894Third green stage 19.815
SRR8316900Third green stage 56.911
SRR8316901Third green stage 54.015
SRR8316898Complete white stage 13.886
SRR8316899Complete white stage 106.745
SRR8316903Complete white stage 23.381
SRR8316902Silver flowering stage5.984
SRR8316904Silver flowering stage9.877
SRR8316905Silver flowering stage3.276
SRR8316906Gold flowering stage 11.421
SRR8316907Gold flowering stage 10.815
SRR8316908Gold flowering stage 19.613
SRP132670SRR6706286Control60.273
SRR6706287Light intensity 50%65.261
SRR6706288Light intensity 20%75.948
CNP0000432CNS0095592Slightly white alabastrum(diploid) 164.505
CNS0095593Slightly white alabastrum(diploid) 269.605
CNS0095594Slightly white alabastrum(diploid) 359.842
CNS0095595Whole white alabastrum(diploid) 261.271
CNS0095596Whole white alabastrum(diploid) 339.280
CNS0095597Whole white alabastrum(diploid) 450.037
CNS0095598Silvery flower (diploied) 192.516
CNS0095599Silvery flower (diploied) 275.284
CNS0095600Silvery flower (diploied) 342.133
CNS0095601Golden flower (diploid) 178.423
CNS0095602Golden flower (diploid) 263.859
CNS0095603Golden flower (diploid) 356.375
CNS0095604Slightly white alabastrum(tetraploid) 155.698
CNS0095605Slightly white alabastrum(tetraploid) 246.177
CNS0095606Slightly white alabastrum(tetraploid) 3102.140
CNS0095607Whole white alabastrum(tetraploid) 134.866
CNS0095608Whole white alabastrum(tetraploid) 227.810
CNS0095609Whole white alabastrum(tetraploid) 344.573
CNS0095610Silvery flower (tetraploid) 126.871
CNS0095611Silvery flower (tetraploid) 241.248
CNS0095612Silvery flower (tetraploid) 324.935
CNS0095613Golden flower (tetraploid) 121.291
CNS0095614Golden flower (tetraploid) 231.579
CNS0095615Golden flower (tetraploid) 321.885
CRA001975CRR073297Stem 178.522
CRR073298Stem 267.488
CRR073299Stem 3109.664
CRR073300Leaf 147.709
CRR073301Leaf 256.622
CRR073302Leaf 359.724
CRR073303Juvenile bud 162.450
CRR073304Juvenile bud 237.009
CRR073305Juvenile bud 365.364
CRR073306Third green 15.067
CRR073307Third green 25.447
CRR073308Third green 38.046
CRR073309Second white 14.905
CRR073310Second white 24.662
CRR073311Second white 31.626
CRR073312Silver flowering 11.326
CRR073313Silver flowering 22.515
CRR073314Silver flowering 33.496
CRR073315Gold flowering 177.276
CRR073316Gold flowering 2104.040
CRR073317Gold flowering 370.482
CRR073318Tawny withering 1125.622
CRR073319Tawny withering 2114.380
CRR073320Tawny withering 3153.067