Detail information of GWHGAAZE018321


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrKDP29656.13.7339E-104hypothetical protein JCGZ_18818 [Jatropha curcas]
Swissprottr|Q94F47|UBC28_ARATH4E-103Ubiquitin-conjugating enzyme E2 28
trEMBLtr|A0A067K0A8|A0A067K0A8_JATCU1E-104Uncharacterized protein {ECO:0000313|EMBL:KDP29656.1}
TAIR10AT1G64230.26E-81ubiquitin-conjugating enzyme 28

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000005gene1792709917927900-
GWHAAZE00000005mRNA1792709917927900-
GWHAAZE00000005exon1792709917927242-
GWHAAZE00000005exon1792737917927483-
GWHAAZE00000005exon1792760617927733-
GWHAAZE00000005exon1792783117927900-
GWHAAZE00000005CDS1792783117927900-
GWHAAZE00000005CDS1792760617927733-
GWHAAZE00000005CDS1792737917927483-
GWHAAZE00000005CDS1792709917927242-
Transcript Sequence

Network for GWHGAAZE018321

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF00179.27UQ_con51412.20E-52
Protein Sequence

Gene family

Gene familysubfamily
Ubiquitin FamilyUBC

KEGG pathway

KO Enzyme pathway mapID
K06689UBE2D, UBC4, UBC5 Protein processing in endoplasmic reticulum map04141
Ubiquitin mediated proteolysismap04120
MAPK signaling pathway - flymap04013
Toll and Imd signaling pathwaymap04624

Gene Ontology

GO term OntologyName

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf70.075
SRR3591706second leaf35.446
SRR3591707mature leaf72.912
SRR3591708Shoot apex10.852
SRR3591709Stem87.446
SRR3591710White floral bud28.070
SRR3591711White flower49.935
SRR3591712Green floral bud22.698
SRR3591713Yellow flower42.857
SRP173429 SRR8316895Juvenile bud stage 6.360
SRR8316896Juvenile bud stage 19.056
SRR8316897Juvenile bud stage 12.612
SRR8316894Third green stage 7.136
SRR8316900Third green stage 13.353
SRR8316901Third green stage 17.115
SRR8316898Complete white stage 17.241
SRR8316899Complete white stage 53.760
SRR8316903Complete white stage 14.655
SRR8316902Silver flowering stage27.554
SRR8316904Silver flowering stage26.547
SRR8316905Silver flowering stage12.011
SRR8316906Gold flowering stage 56.378
SRR8316907Gold flowering stage 49.916
SRR8316908Gold flowering stage 39.997
SRP132670SRR6706286Control10.380
SRR6706287Light intensity 50%12.016
SRR6706288Light intensity 20%9.434
CNP0000432CNS0095592Slightly white alabastrum(diploid) 138.229
CNS0095593Slightly white alabastrum(diploid) 242.938
CNS0095594Slightly white alabastrum(diploid) 343.929
CNS0095595Whole white alabastrum(diploid) 234.842
CNS0095596Whole white alabastrum(diploid) 37.526
CNS0095597Whole white alabastrum(diploid) 431.786
CNS0095598Silvery flower (diploied) 144.437
CNS0095599Silvery flower (diploied) 251.539
CNS0095600Silvery flower (diploied) 342.892
CNS0095601Golden flower (diploid) 142.220
CNS0095602Golden flower (diploid) 245.075
CNS0095603Golden flower (diploid) 346.066
CNS0095604Slightly white alabastrum(tetraploid) 19.276
CNS0095605Slightly white alabastrum(tetraploid) 212.107
CNS0095606Slightly white alabastrum(tetraploid) 38.585
CNS0095607Whole white alabastrum(tetraploid) 116.263
CNS0095608Whole white alabastrum(tetraploid) 218.093
CNS0095609Whole white alabastrum(tetraploid) 33.278
CNS0095610Silvery flower (tetraploid) 120.532
CNS0095611Silvery flower (tetraploid) 22.701
CNS0095612Silvery flower (tetraploid) 315.999
CNS0095613Golden flower (tetraploid) 144.687
CNS0095614Golden flower (tetraploid) 224.647
CNS0095615Golden flower (tetraploid) 318.115
CRA001975CRR073297Stem 113.497
CRR073298Stem 223.802
CRR073299Stem 328.449
CRR073300Leaf 111.962
CRR073301Leaf 218.844
CRR073302Leaf 316.816
CRR073303Juvenile bud 130.770
CRR073304Juvenile bud 216.223
CRR073305Juvenile bud 334.276
CRR073306Third green 152.373
CRR073307Third green 262.699
CRR073308Third green 359.323
CRR073309Second white 151.121
CRR073310Second white 233.720
CRR073311Second white 328.235
CRR073312Silver flowering 150.955
CRR073313Silver flowering 235.728
CRR073314Silver flowering 332.659
CRR073315Gold flowering 1163.873
CRR073316Gold flowering 2241.440
CRR073317Gold flowering 3182.769
CRR073318Tawny withering 1165.748
CRR073319Tawny withering 2468.595
CRR073320Tawny withering 3185.879