Detail information of GWHGAAZE018320


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrXP_009791612.10PREDICTED: probable serine/threonine-protein kinase RLCKVII [Nicotiana sylvestris]
Swissprottr|Q9FFW5|PERK8_ARATH5E-73Proline-rich receptor-like protein kinase PERK8
trEMBLtr|A0A068V221|A0A068V221_COFCA0Coffea canephora DH200=94 genomic scaffold, scaffold_87 {ECO:0000313|EMBL:CDP14559.1}
TAIR10AT2G16750.15E-144Protein kinase protein with adenine nucleotide alpha hydrolases-like domain

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000005gene1791782217921327-
GWHAAZE00000005mRNA1791782217921327-
GWHAAZE00000005exon1792117417921327-
GWHAAZE00000005exon1792098617921059-
GWHAAZE00000005exon1792077017920888-
GWHAAZE00000005exon1792035117920466-
GWHAAZE00000005exon1791977317920270-
GWHAAZE00000005exon1791925517919503-
GWHAAZE00000005exon1791900417919167-
GWHAAZE00000005exon1791867817918905-
GWHAAZE00000005exon1791816417918313-
GWHAAZE00000005exon1791782217918064-
GWHAAZE00000005CDS1792117417921327-
GWHAAZE00000005CDS1792098617921059-
GWHAAZE00000005CDS1792077017920888-
GWHAAZE00000005CDS1792035117920466-
GWHAAZE00000005CDS1791977317920270-
GWHAAZE00000005CDS1791925517919503-
GWHAAZE00000005CDS1791900417919167-
GWHAAZE00000005CDS1791867817918905-
GWHAAZE00000005CDS1791816417918313-
GWHAAZE00000005CDS1791782217918064-
Transcript Sequence

Network for GWHGAAZE018320

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF00069.26Pkinase3195871.20E-41
Protein Sequence

Gene family

Gene familysubfamily
Protein Kinases FamilyRLK-Pelle_RLCK-VI

KEGG pathway

KO Enzyme pathway mapID
--------

Gene Ontology

GO term OntologyName
GO:0006468biological_processprotein phosphorylation
GO:0004672molecular_functionprotein kinase activity
GO:0005524molecular_functionATP binding

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf2.050
SRR3591706second leaf2.372
SRR3591707mature leaf4.503
SRR3591708Shoot apex2.440
SRR3591709Stem7.846
SRR3591710White floral bud8.756
SRR3591711White flower12.294
SRR3591712Green floral bud14.830
SRR3591713Yellow flower13.451
SRP173429 SRR8316895Juvenile bud stage 2.439
SRR8316896Juvenile bud stage 6.684
SRR8316897Juvenile bud stage 2.052
SRR8316894Third green stage 2.964
SRR8316900Third green stage 6.830
SRR8316901Third green stage 5.204
SRR8316898Complete white stage 1.373
SRR8316899Complete white stage 2.390
SRR8316903Complete white stage 2.518
SRR8316902Silver flowering stage0.595
SRR8316904Silver flowering stage0.966
SRR8316905Silver flowering stage0.237
SRR8316906Gold flowering stage 3.580
SRR8316907Gold flowering stage 3.001
SRR8316908Gold flowering stage 5.950
SRP132670SRR6706286Control5.321
SRR6706287Light intensity 50%4.968
SRR6706288Light intensity 20%5.059
CNP0000432CNS0095592Slightly white alabastrum(diploid) 12.926
CNS0095593Slightly white alabastrum(diploid) 21.797
CNS0095594Slightly white alabastrum(diploid) 33.555
CNS0095595Whole white alabastrum(diploid) 26.269
CNS0095596Whole white alabastrum(diploid) 38.049
CNS0095597Whole white alabastrum(diploid) 49.944
CNS0095598Silvery flower (diploied) 16.451
CNS0095599Silvery flower (diploied) 24.850
CNS0095600Silvery flower (diploied) 33.226
CNS0095601Golden flower (diploid) 15.211
CNS0095602Golden flower (diploid) 24.067
CNS0095603Golden flower (diploid) 34.951
CNS0095604Slightly white alabastrum(tetraploid) 12.668
CNS0095605Slightly white alabastrum(tetraploid) 22.289
CNS0095606Slightly white alabastrum(tetraploid) 31.037
CNS0095607Whole white alabastrum(tetraploid) 18.563
CNS0095608Whole white alabastrum(tetraploid) 211.658
CNS0095609Whole white alabastrum(tetraploid) 37.566
CNS0095610Silvery flower (tetraploid) 11.612
CNS0095611Silvery flower (tetraploid) 21.103
CNS0095612Silvery flower (tetraploid) 31.456
CNS0095613Golden flower (tetraploid) 11.318
CNS0095614Golden flower (tetraploid) 22.303
CNS0095615Golden flower (tetraploid) 30.292
CRA001975CRR073297Stem 111.956
CRR073298Stem 29.790
CRR073299Stem 314.521
CRR073300Leaf 12.755
CRR073301Leaf 21.431
CRR073302Leaf 31.759
CRR073303Juvenile bud 10.965
CRR073304Juvenile bud 20.516
CRR073305Juvenile bud 30.121
CRR073306Third green 10.043
CRR073307Third green 20.000
CRR073308Third green 30.219
CRR073309Second white 10.000
CRR073310Second white 20.091
CRR073311Second white 30.080
CRR073312Silver flowering 10.703
CRR073313Silver flowering 20.296
CRR073314Silver flowering 30.325
CRR073315Gold flowering 10.482
CRR073316Gold flowering 20.800
CRR073317Gold flowering 31.142
CRR073318Tawny withering 15.749
CRR073319Tawny withering 27.373
CRR073320Tawny withering 32.524