Detail information of GWHGAAZE018314


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrXP_004287066.10PREDICTED: glycerate dehydrogenase-like [Fragaria vesca subsp. vesca]
Swissprottr|Q9C9W5|HPR1_ARATH0Glycerate dehydrogenase HPR, peroxisomal
trEMBLtr|M5VW13|M5VW13_PRUPE0Uncharacterized protein {ECO:0000313|EMBL:EMJ01123.1}
TAIR10AT1G68010.10hydroxypyruvate reductase

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000005gene1785162817854684-
GWHAAZE00000005mRNA1785162817854684-
GWHAAZE00000005exon1785162817851650-
GWHAAZE00000005exon1785173117851845-
GWHAAZE00000005exon1785227017852314-
GWHAAZE00000005exon1785248017852557-
GWHAAZE00000005exon1785266117852768-
GWHAAZE00000005exon1785286517852939-
GWHAAZE00000005exon1785303817853129-
GWHAAZE00000005exon1785323017853281-
GWHAAZE00000005exon1785364517853726-
GWHAAZE00000005exon1785384717853968-
GWHAAZE00000005exon1785416117854301-
GWHAAZE00000005exon1785439117854474-
GWHAAZE00000005exon1785456217854684-
GWHAAZE00000005CDS1785456217854684-
GWHAAZE00000005CDS1785439117854474-
GWHAAZE00000005CDS1785416117854301-
GWHAAZE00000005CDS1785384717853968-
GWHAAZE00000005CDS1785364517853726-
GWHAAZE00000005CDS1785323017853281-
GWHAAZE00000005CDS1785303817853129-
GWHAAZE00000005CDS1785286517852939-
GWHAAZE00000005CDS1785266117852768-
GWHAAZE00000005CDS1785248017852557-
GWHAAZE00000005CDS1785227017852314-
GWHAAZE00000005CDS1785173117851845-
GWHAAZE00000005CDS1785162817851650-
Transcript Sequence

Network for GWHGAAZE018314

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF00389.312-Hacid_dh363391.10E-16
PF02826.202-Hacid_dh_C1303154.30E-48
Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
K15893HPR1 Metabolic pathways map01100
Biosynthesis of secondary metabolitesmap01110
Microbial metabolism in diverse environmentsmap01120
Carbon metabolismmap01200
Glyoxylate and dicarboxylate metabolismmap00630
Glycine, serine and threonine metabolismmap00260

Gene Ontology

GO term OntologyName
GO:0055114biological_processoxidation-reduction process
GO:0051287molecular_functionNAD binding
GO:0016616molecular_functionoxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf124.753
SRR3591706second leaf595.826
SRR3591707mature leaf760.712
SRR3591708Shoot apex187.300
SRR3591709Stem90.918
SRR3591710White floral bud11.248
SRR3591711White flower13.508
SRR3591712Green floral bud7.325
SRR3591713Yellow flower10.472
SRP173429 SRR8316895Juvenile bud stage 47.917
SRR8316896Juvenile bud stage 43.868
SRR8316897Juvenile bud stage 38.225
SRR8316894Third green stage 15.895
SRR8316900Third green stage 28.157
SRR8316901Third green stage 24.219
SRR8316898Complete white stage 15.579
SRR8316899Complete white stage 28.722
SRR8316903Complete white stage 26.658
SRR8316902Silver flowering stage10.886
SRR8316904Silver flowering stage18.528
SRR8316905Silver flowering stage8.989
SRR8316906Gold flowering stage 21.974
SRR8316907Gold flowering stage 20.127
SRR8316908Gold flowering stage 24.513
SRP132670SRR6706286Control23.560
SRR6706287Light intensity 50%19.947
SRR6706288Light intensity 20%18.435
CNP0000432CNS0095592Slightly white alabastrum(diploid) 118.059
CNS0095593Slightly white alabastrum(diploid) 218.136
CNS0095594Slightly white alabastrum(diploid) 316.927
CNS0095595Whole white alabastrum(diploid) 213.217
CNS0095596Whole white alabastrum(diploid) 38.432
CNS0095597Whole white alabastrum(diploid) 411.582
CNS0095598Silvery flower (diploied) 161.707
CNS0095599Silvery flower (diploied) 260.644
CNS0095600Silvery flower (diploied) 335.242
CNS0095601Golden flower (diploid) 166.471
CNS0095602Golden flower (diploid) 249.876
CNS0095603Golden flower (diploid) 346.431
CNS0095604Slightly white alabastrum(tetraploid) 120.938
CNS0095605Slightly white alabastrum(tetraploid) 220.015
CNS0095606Slightly white alabastrum(tetraploid) 336.309
CNS0095607Whole white alabastrum(tetraploid) 115.540
CNS0095608Whole white alabastrum(tetraploid) 211.167
CNS0095609Whole white alabastrum(tetraploid) 322.807
CNS0095610Silvery flower (tetraploid) 146.704
CNS0095611Silvery flower (tetraploid) 249.775
CNS0095612Silvery flower (tetraploid) 327.902
CNS0095613Golden flower (tetraploid) 120.596
CNS0095614Golden flower (tetraploid) 240.677
CNS0095615Golden flower (tetraploid) 321.972
CRA001975CRR073297Stem 180.196
CRR073298Stem 263.164
CRR073299Stem 383.179
CRR073300Leaf 117.616
CRR073301Leaf 221.365
CRR073302Leaf 320.391
CRR073303Juvenile bud 118.708
CRR073304Juvenile bud 213.332
CRR073305Juvenile bud 325.090
CRR073306Third green 18.274
CRR073307Third green 28.613
CRR073308Third green 39.226
CRR073309Second white 117.442
CRR073310Second white 28.371
CRR073311Second white 37.153
CRR073312Silver flowering 13.774
CRR073313Silver flowering 25.159
CRR073314Silver flowering 35.383
CRR073315Gold flowering 1820.612
CRR073316Gold flowering 2920.138
CRR073317Gold flowering 3714.936
CRR073318Tawny withering 153.649
CRR073319Tawny withering 263.572
CRR073320Tawny withering 342.156