Gene detail

Detail information of GWHGAAZE018311

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_010327398.1	2.5122E-135	PREDICTED: pre-mRNA-splicing factor syf2 isoform X2 [Solanum lycopersicum]
trEMBL	tr\|M1CJD6\|M1CJD6_SOLTU	6E-135	Uncharacterized protein {ECO:0000313\|EnsemblPlants:PGSC0003DMT400068702}
TAIR10	AT2G16860.1	4E-89	GCIP-interacting family protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000005	gene	17812036	17814837	+
GWHAAZE00000005	mRNA	17812036	17814837	+
GWHAAZE00000005	exon	17812036	17812129	+
GWHAAZE00000005	exon	17813453	17813601	+
GWHAAZE00000005	exon	17813776	17814016	+
GWHAAZE00000005	exon	17814376	17814512	+
GWHAAZE00000005	exon	17814610	17814837	+
GWHAAZE00000005	CDS	17812036	17812129	+
GWHAAZE00000005	CDS	17813453	17813601	+
GWHAAZE00000005	CDS	17813776	17814016	+
GWHAAZE00000005	CDS	17814376	17814512	+
GWHAAZE00000005	CDS	17814610	17814837	+

Transcript Sequence
>GWHTAAZE018333 ATGTCACAATCTCTTGAGCAATTCCAGAGTAATAAGTTTATGATGCCATTAGCCCCAACATGGTTGGAATTCCTAATAAAAAACAATGCTGCAGGAGTAACGCAAGCCAGTGGTGGTGATGTTCAGCCCGGTACAGTTACCCCTTCTGACCAGGAGGAAGATCAACATGATGAAATGCATGGTCTCGAAGGTCATCCAAATGTGGATAGTGACAATGCTGTTGAGGAAAATTTAGAAGGAGATAATGAGGCAAGAAAAGCCAATCAAACTGCCATGGTGGCAGAGAAGAAACGAATGGAAGCTCCAACAGAGTCTAGGGGCATTTCTAAACAGAAGTGGATGGAGGAGAGGAAGAAAAAGATTGGGAAACTTTTAGATGCCAATGGTTTGGATATGACTAAAGCTTATATGTTAGATACTCAGCAAATGGCAGAGACAAAGTATAAGAAATGGGAAAAAGAGCCAGCTCCGTTTGGTTGGGATGTTTTCAATCAGAAGACACTGTACGATGCTTACAAGAAAAGGACCAAGAATATTAAAGTTGATGTTGAAGAATACAACAAAATGAAAGAAGCTGATCCTGAGTTCTACCGAGAAGCTTCAAGCCTCCAATATGGAAAGGCTCCGAAGATTTCAGAGGACAACATTGATAGGATGGTGAAGGAGCTCAAGGACAGGGATGAGAAGCGACAGTCGTTTAGCAGGAGGAGAAAGTTCCGTGAAGAGAAGGACATTGACTCGATTAATGACCGTAACGAACACTTCAATAAGAAGATCGAGCGTGCCTTTGGCAAGTACACACTTGAGATCAAGAATAATCTTGAGAGAGGAACTGCTTTGCCCGACTAA

Network for GWHGAAZE018311

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF08231.13	SYF2	128	275	3.00E-36

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K12868	SYF2	Spliceosome	map03040

Gene Ontology

GO term	Ontology	Name

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	56.391
	SRR3591706	second leaf	37.027
	SRR3591707	mature leaf	44.360
	SRR3591708	Shoot apex	54.577
	SRR3591709	Stem	63.956
	SRR3591710	White floral bud	58.788
	SRR3591711	White flower	89.689
	SRR3591712	Green floral bud	60.910
	SRR3591713	Yellow flower	80.037
SRP173429	SRR8316895	Juvenile bud stage	36.249
	SRR8316896	Juvenile bud stage	49.593
	SRR8316897	Juvenile bud stage	22.035
	SRR8316894	Third green stage	20.120
	SRR8316900	Third green stage	57.635
	SRR8316901	Third green stage	56.837
	SRR8316898	Complete white stage	32.059
	SRR8316899	Complete white stage	73.481
	SRR8316903	Complete white stage	43.778
	SRR8316902	Silver flowering stage	44.009
	SRR8316904	Silver flowering stage	54.935
	SRR8316905	Silver flowering stage	28.442
	SRR8316906	Gold flowering stage	93.425
	SRR8316907	Gold flowering stage	90.498
	SRR8316908	Gold flowering stage	100.675
SRP132670	SRR6706286	Control	28.427
	SRR6706287	Light intensity 50%	29.826
	SRR6706288	Light intensity 20%	29.505
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	33.772
	CNS0095593	Slightly white alabastrum(diploid) 2	40.918
	CNS0095594	Slightly white alabastrum(diploid) 3	39.012
	CNS0095595	Whole white alabastrum(diploid) 2	35.047
	CNS0095596	Whole white alabastrum(diploid) 3	33.692
	CNS0095597	Whole white alabastrum(diploid) 4	35.512
	CNS0095598	Silvery flower (diploied) 1	49.269
	CNS0095599	Silvery flower (diploied) 2	44.499
	CNS0095600	Silvery flower (diploied) 3	63.940
	CNS0095601	Golden flower (diploid) 1	45.212
	CNS0095602	Golden flower (diploid) 2	58.577
	CNS0095603	Golden flower (diploid) 3	62.658
	CNS0095604	Slightly white alabastrum(tetraploid) 1	33.592
	CNS0095605	Slightly white alabastrum(tetraploid) 2	31.111
	CNS0095606	Slightly white alabastrum(tetraploid) 3	46.929
	CNS0095607	Whole white alabastrum(tetraploid) 1	24.632
	CNS0095608	Whole white alabastrum(tetraploid) 2	27.190
	CNS0095609	Whole white alabastrum(tetraploid) 3	42.888
	CNS0095610	Silvery flower (tetraploid) 1	73.425
	CNS0095611	Silvery flower (tetraploid) 2	79.678
	CNS0095612	Silvery flower (tetraploid) 3	49.954
	CNS0095613	Golden flower (tetraploid) 1	62.282
	CNS0095614	Golden flower (tetraploid) 2	69.531
	CNS0095615	Golden flower (tetraploid) 3	59.753
CRA001975	CRR073297	Stem 1	51.829
	CRR073298	Stem 2	51.038
	CRR073299	Stem 3	49.116
	CRR073300	Leaf 1	40.198
	CRR073301	Leaf 2	45.806
	CRR073302	Leaf 3	36.402
	CRR073303	Juvenile bud 1	40.999
	CRR073304	Juvenile bud 2	33.340
	CRR073305	Juvenile bud 3	38.862
	CRR073306	Third green 1	23.634
	CRR073307	Third green 2	20.250
	CRR073308	Third green 3	19.572
	CRR073309	Second white 1	24.049
	CRR073310	Second white 2	35.571
	CRR073311	Second white 3	33.082
	CRR073312	Silver flowering 1	21.244
	CRR073313	Silver flowering 2	21.227
	CRR073314	Silver flowering 3	20.519
	CRR073315	Gold flowering 1	48.309
	CRR073316	Gold flowering 2	59.257
	CRR073317	Gold flowering 3	23.771
	CRR073318	Tawny withering 1	42.330
	CRR073319	Tawny withering 2	44.331
	CRR073320	Tawny withering 3	38.614