Gene detail

Detail information of GWHGAAZE018301

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	CBI37826.3	0	unnamed protein product [Vitis vinifera]
Swissprot	tr\|Q93YV6\|2A5I_ARATH	3E-124	Serine/threonine protein phosphatase 2A 57 kDa regulatory subunit B' iota isoform
trEMBL	tr\|F6I0Y2\|F6I0Y2_VITVI	0	Putative uncharacterized protein {ECO:0000313\|EMBL:CCB60598.1}
TAIR10	AT3G09880.1	2E-96	Protein phosphatase 2A regulatory B subunit family protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000005	gene	17644294	17646568	+
GWHAAZE00000005	mRNA	17644294	17646568	+
GWHAAZE00000005	exon	17644294	17645355	+
GWHAAZE00000005	exon	17646221	17646568	+
GWHAAZE00000005	CDS	17644294	17645355	+
GWHAAZE00000005	CDS	17646221	17646568	+

Transcript Sequence
>GWHTAAZE018323 ATGGGAGCCCAGAAAAACAGCCCCAGAGCCTCGCCAATGAAAAAATCTACCACTCTTCAACACCTTTTCGACCTCGATTCAAAGAGCCCCACCAGTAGCAGCCTTTCCAATTCCACCACTATTAGCAGCAAGAATTCATCTTTAGAATCCGAAAATGAAGAAATTCTCACTATAATCTCTTATTGTACCTCAAACTATCCGGTTTTTGATCCTAATGATTCTTCTTCACACCAAGATCTAAAGCGCCTCAAGCTCATTCAACTCCTCTCTATCATAAAAACTTCAAAAAAGCCGCTCAATGAACAAATTCTTCTACCCTTGTTTGCCATGTTATCGGCCAACCTCTTTCGGCCACTCCCTCCCTCTTATAACTCCTCGGTCATTTCCATATTACCCGATGACGATGATCTTATTGCCACTCCAATGGCCGTCTGGCCCCATTTGCAAATCCTTTACGATATCCTCCTCCGCCTAGTCATCAACATGGATCCCAAGATACTCCGAGAATACATCGACCAATCTTTCCTCATAAACCTCCTCGTTCTCTTCCAATCAGAGGATCCAAGGGAACGCGAGAGCTTGAAGAATGCATACCACCGGATATATTCCAAATTCACCTTCTACCGTTCATTCATGAGAAAGGCGATGAACGACGTGTTCTTGCACTACGTTTTCGAGACGGATATGCGCCATAGTGGGATCGGGGAGCTTCTTGAGATATGGGGAAGCATTATTAATGGATTTACCGTTCCATTAAAGGAAGAACACAAGCTTTTCTTGATGAGAGTTCTTGTTCCTTTGCACAAGCCAAAGAGTATGCAGGTTTACCATAGGCAGTTGGCTTATTGCGTTTCGCAGTTTGTGCAGAAGGAGCCTGTTCTTGGTGGGGTGGCTGTTAGAGGGATTTTGAGGTATTGGCCTGTCACTAATTGTCAAAAGGAAGTTTTGCTTATAGGGGAATTGGAGGAACTGGTGGAGAATATAGACCCTGAGCAGTACAGGAAGCTAGCTCTGCCTATATGTACTCAAATAACAAAGTGCTTGAACAGTTGGAACTCACAGGTGGCAGAACGTGCACTGTACGTGTGGAACAACGAGCAGTTTGCGAAGATGGTGGAACAAGCAATGGAGGAGGTGTTTCCGGTGTTGGTAGAGGGGATGGAGAAGAACCTGAAATGGCACTGGAGCAAGAGTGTACAACAATTGACCGAAAATGTGAAGCTGATGCTGCAAGAGCTTGAGCCCAGGTTGTACTCAAAGTGCCTCCAAAGAATCGATGCTCGACAATTGGCTGCTCTGCATGCGGAGATGAAGAGGAAAGACAAGTGGGAAAGAATAGAAATGGCTGCTGCTAAGAACCAGTTATTTCAACAACCACCACATCATAATAATACTAGTATATGTGTTTGA

Network for GWHGAAZE018301

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF01603.21	B56	46	450	5.10E-136

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K11584	PPP2R5	mRNA surveillance pathway	map03015
		Sphingolipid signaling pathway	map04071
		PI3K-Akt signaling pathway	map04151
		AMPK signaling pathway	map04152
		Meiosis - yeast	map04113
		Oocyte meiosis	map04114
		Adrenergic signaling in cardiomyocytes	map04261
		Dopaminergic synapse	map04728

Gene Ontology

GO term	Ontology	Name
GO:0007165	biological_process	signal transduction
GO:0000159	cellular_component	protein phosphatase type 2A complex
GO:0019888	molecular_function	protein phosphatase regulator activity

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	3.202
	SRR3591706	second leaf	1.485
	SRR3591707	mature leaf	0.681
	SRR3591708	Shoot apex	1.981
	SRR3591709	Stem	6.156
	SRR3591710	White floral bud	3.857
	SRR3591711	White flower	2.419
	SRR3591712	Green floral bud	9.568
	SRR3591713	Yellow flower	0.194
SRP173429	SRR8316895	Juvenile bud stage	0.188
	SRR8316896	Juvenile bud stage	1.711
	SRR8316897	Juvenile bud stage	0.540
	SRR8316894	Third green stage	1.510
	SRR8316900	Third green stage	6.868
	SRR8316901	Third green stage	6.690
	SRR8316898	Complete white stage	0.570
	SRR8316899	Complete white stage	11.352
	SRR8316903	Complete white stage	1.099
	SRR8316902	Silver flowering stage	0.523
	SRR8316904	Silver flowering stage	0.852
	SRR8316905	Silver flowering stage	0.421
	SRR8316906	Gold flowering stage	0.145
	SRR8316907	Gold flowering stage	0.364
	SRR8316908	Gold flowering stage	0.202
SRP132670	SRR6706286	Control	9.677
	SRR6706287	Light intensity 50%	10.022
	SRR6706288	Light intensity 20%	10.132
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	1.834
	CNS0095593	Slightly white alabastrum(diploid) 2	2.237
	CNS0095594	Slightly white alabastrum(diploid) 3	1.121
	CNS0095595	Whole white alabastrum(diploid) 2	4.161
	CNS0095596	Whole white alabastrum(diploid) 3	4.715
	CNS0095597	Whole white alabastrum(diploid) 4	3.272
	CNS0095598	Silvery flower (diploied) 1	0.856
	CNS0095599	Silvery flower (diploied) 2	0.313
	CNS0095600	Silvery flower (diploied) 3	0.707
	CNS0095601	Golden flower (diploid) 1	0.555
	CNS0095602	Golden flower (diploid) 2	0.335
	CNS0095603	Golden flower (diploid) 3	0.295
	CNS0095604	Slightly white alabastrum(tetraploid) 1	4.771
	CNS0095605	Slightly white alabastrum(tetraploid) 2	2.182
	CNS0095606	Slightly white alabastrum(tetraploid) 3	9.642
	CNS0095607	Whole white alabastrum(tetraploid) 1	3.944
	CNS0095608	Whole white alabastrum(tetraploid) 2	3.913
	CNS0095609	Whole white alabastrum(tetraploid) 3	5.866
	CNS0095610	Silvery flower (tetraploid) 1	0.689
	CNS0095611	Silvery flower (tetraploid) 2	0.588
	CNS0095612	Silvery flower (tetraploid) 3	0.083
	CNS0095613	Golden flower (tetraploid) 1	0.036
	CNS0095614	Golden flower (tetraploid) 2	0.353
	CNS0095615	Golden flower (tetraploid) 3	0.237
CRA001975	CRR073297	Stem 1	2.993
	CRR073298	Stem 2	6.938
	CRR073299	Stem 3	2.760
	CRR073300	Leaf 1	9.840
	CRR073301	Leaf 2	13.173
	CRR073302	Leaf 3	5.910
	CRR073303	Juvenile bud 1	8.980
	CRR073304	Juvenile bud 2	3.384
	CRR073305	Juvenile bud 3	11.803
	CRR073306	Third green 1	0.636
	CRR073307	Third green 2	1.481
	CRR073308	Third green 3	1.633
	CRR073309	Second white 1	0.053
	CRR073310	Second white 2	0.000
	CRR073311	Second white 3	0.000
	CRR073312	Silver flowering 1	0.000
	CRR073313	Silver flowering 2	0.000
	CRR073314	Silver flowering 3	0.000
	CRR073315	Gold flowering 1	0.000
	CRR073316	Gold flowering 2	0.000
	CRR073317	Gold flowering 3	0.455
	CRR073318	Tawny withering 1	1.485
	CRR073319	Tawny withering 2	0.373
	CRR073320	Tawny withering 3	1.156