Gene detail

Detail information of GWHGAAZE018292

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_011088655.1	0	PREDICTED: serine/threonine-protein kinase HT1 [Sesamum indicum]
Swissprot	tr\|Q2MHE4\|HT1_ARATH	3E-32	Serine/threonine-protein kinase HT1
trEMBL	tr\|K4B450\|K4B450_SOLLC	0	Uncharacterized protein {ECO:0000313\|EnsemblPlants:Solyc01g111880.2.1}
TAIR10	AT4G38470.1	4E-150	ACT-like protein tyrosine kinase family protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000005	gene	17522272	17529774	+
GWHAAZE00000005	mRNA	17522272	17529774	+
GWHAAZE00000005	exon	17522272	17522468	+
GWHAAZE00000005	exon	17523067	17523181	+
GWHAAZE00000005	exon	17524466	17524539	+
GWHAAZE00000005	exon	17524671	17524790	+
GWHAAZE00000005	exon	17525604	17525658	+
GWHAAZE00000005	exon	17526318	17526428	+
GWHAAZE00000005	exon	17527720	17527895	+
GWHAAZE00000005	exon	17527969	17528076	+
GWHAAZE00000005	exon	17529374	17529447	+
GWHAAZE00000005	exon	17529575	17529774	+
GWHAAZE00000005	CDS	17522272	17522468	+
GWHAAZE00000005	CDS	17523067	17523181	+
GWHAAZE00000005	CDS	17524466	17524539	+
GWHAAZE00000005	CDS	17524671	17524790	+
GWHAAZE00000005	CDS	17525604	17525658	+
GWHAAZE00000005	CDS	17526318	17526428	+
GWHAAZE00000005	CDS	17527720	17527895	+
GWHAAZE00000005	CDS	17527969	17528076	+
GWHAAZE00000005	CDS	17529374	17529447	+
GWHAAZE00000005	CDS	17529575	17529774	+

Transcript Sequence
>GWHTAAZE018314 ATGGTGATGAAGGATAACGAGAGTTGTGCAAGTGGAGTAGTAGAATCGTTGCCGGCGAACACTCGGGGGCACCGGAGTGTGAAGCTTGAGGTTTATAATGAGGTTCTTCGGAGGCTCAAAGAATCGAATAATAGTGAGGTTATTGAACCTGGATTTGATAATGAACTTTGGGCTCACTTCAATCGCCTCCCTACTAGGTATGCATTGGACGTGAAAGTGGAAAGGCCAGAAGATGTTCTTAAGCACAAGCGATTACTGCATCTAGCTCGTGATCCTGCTAATAGACCTGCAATTGAAGTCCGCCTAGTGCAGGTCTCTCCACTCCCTTGTGGAAACTCAGCTAATGCAGTTCATATGAGTTCCCAAAGAAATGAAGTTTCTCAAAGTATTCATCCACCACCTGCATTTGGTTCATCTCCTAATCTTGAAGCTCTTGCTCTTGAAGCAAAAAAAATTCAAGTTCAGGATGCGGACTGTTCCAGAAATGCCAGTGCAAACTTTCCTAGGCCCACGCATGAAATTACCTTTTCAACAGATGACAAACCAAAGCTCCTCAGTCAGTTAACCTCTTTACTGGCCGAGGTTGGTTTGAACATCCAGGAAGCACATGCTTTCTCCACAACAGATGGCTACTCCTTAGATGTCTTTGTTGTTGATGGTTGGCCTTATGAGAAACTTCCGTGGCCAACTCAACATTCATCATCATCACTAGCTGAGCATGAGCAGCGAGGCATCACATGCAAACCTGAGTATCTGGAAATACCTACTGATGGCACTGATGTTTGGGAAATTGATCCTCAACTTCTGAAATCTGAGCACAAAGTTGCATCTGGGTCATATGGTGATCTGTACAAAGGTACATATTGTAGTCAGGAAGTGGCTATTAAAGTCCTCAAGGCTGAGCATGTAACTGTAGAAATGCAGAGGGAGTTTGCCCAAGAAGTGTTCATTATGAGGAAAGTTCGGCACAAGAATGTTGTGCAATTCATTGGTGCATGTACAAAACCTCCAAGCTTGTGCATTGTAACAGAATATATGAGTGGTGGGAGTGTGTATGACTATATACATAAACAGAAGGGTACTTTTAAGCTCCCATCTTTACTCAAAATAGCAATTGATGTATCGAAGGGAATGAATTATCTGCACCAGCAGAACATAATACACAGGGATTTGAAAGCTGCCAATCTTCTGATGGATGAAAATGAAGTAAGATGCTTCCTCGCTTTGTAA

Network for GWHGAAZE018292

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF01842.26	ACT	173	219	1.00E-06
PF07714.18	PK_Tyr_Ser-Thr	270	403	1.00E-36

Protein Sequence

Gene family

Gene family	subfamily
Protein Kinases Family	TKL-Pl-4

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0006468	biological_process	protein phosphorylation
GO:0004672	molecular_function	protein kinase activity
GO:0005524	molecular_function	ATP binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	1.419
	SRR3591706	second leaf	0.651
	SRR3591707	mature leaf	0.885
	SRR3591708	Shoot apex	0.282
	SRR3591709	Stem	0.760
	SRR3591710	White floral bud	0.839
	SRR3591711	White flower	1.492
	SRR3591712	Green floral bud	1.963
	SRR3591713	Yellow flower	2.637
SRP173429	SRR8316895	Juvenile bud stage	3.558
	SRR8316896	Juvenile bud stage	4.788
	SRR8316897	Juvenile bud stage	2.246
	SRR8316894	Third green stage	1.997
	SRR8316900	Third green stage	4.312
	SRR8316901	Third green stage	3.175
	SRR8316898	Complete white stage	1.834
	SRR8316899	Complete white stage	4.761
	SRR8316903	Complete white stage	1.727
	SRR8316902	Silver flowering stage	0.918
	SRR8316904	Silver flowering stage	2.688
	SRR8316905	Silver flowering stage	0.708
	SRR8316906	Gold flowering stage	1.144
	SRR8316907	Gold flowering stage	1.567
	SRR8316908	Gold flowering stage	0.821
SRP132670	SRR6706286	Control	1.247
	SRR6706287	Light intensity 50%	1.514
	SRR6706288	Light intensity 20%	1.567
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	2.455
	CNS0095593	Slightly white alabastrum(diploid) 2	1.588
	CNS0095594	Slightly white alabastrum(diploid) 3	3.324
	CNS0095595	Whole white alabastrum(diploid) 2	2.096
	CNS0095596	Whole white alabastrum(diploid) 3	1.637
	CNS0095597	Whole white alabastrum(diploid) 4	1.072
	CNS0095598	Silvery flower (diploied) 1	0.226
	CNS0095599	Silvery flower (diploied) 2	0.733
	CNS0095600	Silvery flower (diploied) 3	0.386
	CNS0095601	Golden flower (diploid) 1	1.252
	CNS0095602	Golden flower (diploid) 2	0.759
	CNS0095603	Golden flower (diploid) 3	0.953
	CNS0095604	Slightly white alabastrum(tetraploid) 1	4.053
	CNS0095605	Slightly white alabastrum(tetraploid) 2	2.403
	CNS0095606	Slightly white alabastrum(tetraploid) 3	1.669
	CNS0095607	Whole white alabastrum(tetraploid) 1	1.419
	CNS0095608	Whole white alabastrum(tetraploid) 2	1.189
	CNS0095609	Whole white alabastrum(tetraploid) 3	1.567
	CNS0095610	Silvery flower (tetraploid) 1	0.184
	CNS0095611	Silvery flower (tetraploid) 2	0.702
	CNS0095612	Silvery flower (tetraploid) 3	0.551
	CNS0095613	Golden flower (tetraploid) 1	0.213
	CNS0095614	Golden flower (tetraploid) 2	0.000
	CNS0095615	Golden flower (tetraploid) 3	0.440
CRA001975	CRR073297	Stem 1	1.475
	CRR073298	Stem 2	1.506
	CRR073299	Stem 3	1.022
	CRR073300	Leaf 1	1.057
	CRR073301	Leaf 2	2.001
	CRR073302	Leaf 3	0.365
	CRR073303	Juvenile bud 1	0.432
	CRR073304	Juvenile bud 2	0.379
	CRR073305	Juvenile bud 3	0.667
	CRR073306	Third green 1	0.260
	CRR073307	Third green 2	0.000
	CRR073308	Third green 3	0.127
	CRR073309	Second white 1	0.398
	CRR073310	Second white 2	0.317
	CRR073311	Second white 3	0.259
	CRR073312	Silver flowering 1	0.124
	CRR073313	Silver flowering 2	0.000
	CRR073314	Silver flowering 3	0.039
	CRR073315	Gold flowering 1	0.000
	CRR073316	Gold flowering 2	0.457
	CRR073317	Gold flowering 3	0.000
	CRR073318	Tawny withering 1	0.340
	CRR073319	Tawny withering 2	0.000
	CRR073320	Tawny withering 3	0.045