Gene detail

Detail information of GWHGAAZE018283

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	CBI37761.3	1.0553E-165	unnamed protein product [Vitis vinifera]
Swissprot	tr\|P0DH62\|Y4407_SELML	2E-36	Inactive protein kinase SELMODRAFT_444075
trEMBL	tr\|W9RKU6\|W9RKU6_9ROSA	1E-148	Proline-rich receptor-like protein kinase PERK1 {ECO:0000313\|EMBL:EXB95364.1}
TAIR10	AT1G77280.1	9E-32	Protein kinase protein with adenine nucleotide alpha hydrolases-like domain

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000005	gene	17411595	17414172	-
GWHAAZE00000005	mRNA	17411595	17414172	-
GWHAAZE00000005	exon	17411595	17411678	-
GWHAAZE00000005	exon	17412127	17412309	-
GWHAAZE00000005	exon	17412401	17412621	-
GWHAAZE00000005	exon	17412912	17413507	-
GWHAAZE00000005	exon	17413590	17413699	-
GWHAAZE00000005	exon	17413786	17414172	-
GWHAAZE00000005	five_prime_UTR	17414065	17414172	-
GWHAAZE00000005	CDS	17413786	17414064	-
GWHAAZE00000005	CDS	17413590	17413699	-
GWHAAZE00000005	CDS	17412912	17413507	-
GWHAAZE00000005	CDS	17412401	17412621	-
GWHAAZE00000005	CDS	17412127	17412309	-
GWHAAZE00000005	CDS	17411595	17411678	-

Transcript Sequence
>GWHTAAZE018305 AAGAAGTCAGGTTAATTGGAATAACTGCTACCAGATTGCGGGAGCAGCACCAAAATGATTAGAGGCATTTAGAATGAAAAGCATTGACAATACTTCATTCTGCAATGGATGCTGACTAAACACAAGAATATCACTCTGTATATCATTTTTGGAAGCCCGAGGGTCAGCGGAAGAATGTTATCGCTCCAAAGGACCAACACAGTGAAGAACAGAAAAATTGTTATTGGCCTGAAATCTGATAACAGCAGCAGAGAAATGCTGCTGCGTTTGCTCACTGTGGTGGTCTTGCCAGGGGACAATGTGCTGGCAGTTCATGTGCAAGATTCAAATGATTCCTTTGATCCAAACACCTTTTACATTCATGAAGATATCTGCAAGTCCAAGCAGGTAGATTTCCAAGTTACAATTTGCACAGATAATTCCTACCTCACCGGATTGAGCTATCAAGTAAGAATAAACTCTGCAACAATACTTGCAGTTGGATGCAGCACCCCGTGGCCTAAAGATTCAAAGGTTTCATACTTTTTAAAAGCATTGCCTCCCACTTGCTCGCTTATGGTAGTGGATAATGGAGGAAGAATCTTATTACAGTGTCCAGGAACTTCACAACAGGGCTCTGCAAGTAAAGTCCTTCAATCTTCACAGTCAGCTCTATCAAGATATAGCAGCTATGACCAACCACAAACTGGCCCACAGATGCAGAAATCTTTGTCAATGCCCTCTACCTCTACATTATCCTCAGTACTACAAACCGAAAAAATGAATCAGTCTAGTTTTACGAAGACATTGCAACTACCTGACTCAGTGTCACAGAAACTGTTTCAAAGATTGGCTACCTTAGAAGTAAAAGGATCTGGGACGTTCTTCTCAGCAGAACGACTTAAACGTGCAACTAATGATTTCAGCCCCAAGTTTTTGATTGGAGAGGGTGGGCACAGTAATGTATACCAAGCCCTCCTTGAGAATGGCCAGGCTGTAGCAGTGAAAGTTTTCAAGAACACAAAATCTTCGGAAGATGATCTTTTCCGAGAGGTGGAAATATTGAGTGGTTTGGAACATGGAAACATAATTCAGCTTATTGGATATTGTTGTGATTTTGGAGCCGCAGTGGTACATCAGCAAGTTTCGGGCTTTTGGAAGCCAATTAATGTTGTTGGAACCTTTGGATACATGGCCCCAGAGTACATGATGTATGGCAAAGTTGATGAGAAGATAGATGTGTATTCTTATGGGGTTGTGCTTTTGGAACTAATCACGGGAAAAGAGGCTTTACAAACGAAACAAGGATCTAATTATGAATGCTTAGTAATCTGGGCGAGGTCTCTTCTCAGGTTTGGGTTATGTGAACGCCTGATTGATCCTTGCCTAAATGGAGGCTACAACGTGGAAGAGATGAAAACAATGATTATTGCAGCACGCTTCTGCCTCTTGCATTCATCCTCCAGAAGGCCAAATATGAAAAGAGTAAATTTTTACCTTTTTTACTACCGTTCTGTGATCCTACGGTTATTTGAGGAGCCGGAACAGTCACTAAAGATGCAGAGAAAGAGGGAAGAGCTCCTCAATATAGTTTGTCCGAAA

Network for GWHGAAZE018283

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00069.26	Pkinase	270	327	1.70E-08
PF00069.26	Pkinase	328	395	2.20E-11

Protein Sequence

Gene family

Gene family	subfamily
Protein Kinases Family	RLK-Pelle_RLCK-VI

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0006468	biological_process	protein phosphorylation
GO:0005524	molecular_function	ATP binding
GO:0004672	molecular_function	protein kinase activity

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	9.923
	SRR3591706	second leaf	11.864
	SRR3591707	mature leaf	5.354
	SRR3591708	Shoot apex	6.949
	SRR3591709	Stem	0.623
	SRR3591710	White floral bud	0.556
	SRR3591711	White flower	0.411
	SRR3591712	Green floral bud	3.507
	SRR3591713	Yellow flower	0.000
SRP173429	SRR8316895	Juvenile bud stage	1.298
	SRR8316896	Juvenile bud stage	2.036
	SRR8316897	Juvenile bud stage	1.008
	SRR8316894	Third green stage	1.863
	SRR8316900	Third green stage	9.298
	SRR8316901	Third green stage	7.696
	SRR8316898	Complete white stage	0.000
	SRR8316899	Complete white stage	5.143
	SRR8316903	Complete white stage	0.042
	SRR8316902	Silver flowering stage	0.000
	SRR8316904	Silver flowering stage	0.070
	SRR8316905	Silver flowering stage	0.043
	SRR8316906	Gold flowering stage	0.000
	SRR8316907	Gold flowering stage	0.000
	SRR8316908	Gold flowering stage	0.000
SRP132670	SRR6706286	Control	5.455
	SRR6706287	Light intensity 50%	6.584
	SRR6706288	Light intensity 20%	6.871
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	0.791
	CNS0095593	Slightly white alabastrum(diploid) 2	1.709
	CNS0095594	Slightly white alabastrum(diploid) 3	1.151
	CNS0095595	Whole white alabastrum(diploid) 2	1.457
	CNS0095596	Whole white alabastrum(diploid) 3	1.746
	CNS0095597	Whole white alabastrum(diploid) 4	1.397
	CNS0095598	Silvery flower (diploied) 1	0.360
	CNS0095599	Silvery flower (diploied) 2	0.164
	CNS0095600	Silvery flower (diploied) 3	0.118
	CNS0095601	Golden flower (diploid) 1	0.134
	CNS0095602	Golden flower (diploid) 2	0.075
	CNS0095603	Golden flower (diploid) 3	0.141
	CNS0095604	Slightly white alabastrum(tetraploid) 1	2.987
	CNS0095605	Slightly white alabastrum(tetraploid) 2	2.582
	CNS0095606	Slightly white alabastrum(tetraploid) 3	10.419
	CNS0095607	Whole white alabastrum(tetraploid) 1	1.104
	CNS0095608	Whole white alabastrum(tetraploid) 2	1.549
	CNS0095609	Whole white alabastrum(tetraploid) 3	6.466
	CNS0095610	Silvery flower (tetraploid) 1	0.000
	CNS0095611	Silvery flower (tetraploid) 2	0.098
	CNS0095612	Silvery flower (tetraploid) 3	0.000
	CNS0095613	Golden flower (tetraploid) 1	0.000
	CNS0095614	Golden flower (tetraploid) 2	0.000
	CNS0095615	Golden flower (tetraploid) 3	0.042
CRA001975	CRR073297	Stem 1	3.265
	CRR073298	Stem 2	3.594
	CRR073299	Stem 3	1.955
	CRR073300	Leaf 1	8.913
	CRR073301	Leaf 2	8.049
	CRR073302	Leaf 3	7.356
	CRR073303	Juvenile bud 1	4.486
	CRR073304	Juvenile bud 2	5.377
	CRR073305	Juvenile bud 3	4.888
	CRR073306	Third green 1	0.218
	CRR073307	Third green 2	0.000
	CRR073308	Third green 3	0.073
	CRR073309	Second white 1	0.000
	CRR073310	Second white 2	0.000
	CRR073311	Second white 3	0.000
	CRR073312	Silver flowering 1	0.019
	CRR073313	Silver flowering 2	0.000
	CRR073314	Silver flowering 3	0.000
	CRR073315	Gold flowering 1	2.084
	CRR073316	Gold flowering 2	3.001
	CRR073317	Gold flowering 3	0.869
	CRR073318	Tawny withering 1	0.087
	CRR073319	Tawny withering 2	0.007
	CRR073320	Tawny withering 3	0.000