Gene detail

Detail information of GWHGAAZE018263

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_009593137.1	0	PREDICTED: probable serine/threonine-protein kinase Cx32, chloroplastic [Nicotiana tomentosiformis]
Swissprot	tr\|P27450\|CX32_ARATH	3E-155	Probable serine/threonine-protein kinase Cx32, chloroplastic (Precursor)
trEMBL	tr\|A0A061E1G6\|A0A061E1G6_THECC	0	Serine/threonine-protein kinase cx32 isoform 2 {ECO:0000313\|EMBL:EOX98889.1}
TAIR10	AT2G17220.2	2E-153	Protein kinase superfamily protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000005	gene	17203853	17207917	+
GWHAAZE00000005	mRNA	17203853	17207917	+
GWHAAZE00000005	exon	17203853	17203919	+
GWHAAZE00000005	exon	17204276	17204601	+
GWHAAZE00000005	exon	17206413	17206548	+
GWHAAZE00000005	exon	17206637	17206779	+
GWHAAZE00000005	exon	17207059	17207182	+
GWHAAZE00000005	exon	17207466	17207917	+
GWHAAZE00000005	CDS	17203853	17203919	+
GWHAAZE00000005	CDS	17204276	17204601	+
GWHAAZE00000005	CDS	17206413	17206548	+
GWHAAZE00000005	CDS	17206637	17206779	+
GWHAAZE00000005	CDS	17207059	17207182	+
GWHAAZE00000005	CDS	17207466	17207917	+

Transcript Sequence
>GWHTAAZE018285 ATGGGTAATTGCTGTGTTTATCCTCCTGTCAACCAAAGCCCCAGCACAACTGGAAATATTAGTTCAGGTATATCACAAACAACCAGCAATACAGTATCTTCAGGTGGCAGCAGTGCCATCTCCGGGAACAGCCAGTTCTCGGCGGCTAGCGGAGATGAGGTGGTGCCAAGTGGGCAGATCTTGCCTGCTCCCAATTTGAGGATCTTCAGTTTCTTGGAACTGAAGATTGCAACAAGAAATTTTAGAAATGATACAGTTTTGGGAGAGGGAGGTTTTGGGAAAGTTTATAAGGGATGGCTTGATGAAAAGGCAAACTCGAGGAATGGAAGTGGATCTGTAATTGCTGTCAAGAAGTTGAATTCTGAGAGCATGCAAGGATTTGAAGAGTGGCAGTCTGAGGTGAACTTCCTAGGAAGACTTTCTCATCCTAATCTTGTCAAGCTGTTGGGATACTGTTGGGAAGATACAGAGCTACTCCTTGTCTATGAATTCATGCAGAAGGGCAGCTTAGAGAATCATCTCTTTGGAAGAGGCTCAGCTGTTCAGCCACTTCCTTGGGAATTACGAATCAAGGTTTTAATTGGAGCCGCTCGAGGCCTGGCATTCTTGCACACATCAGAGAAACAAGTAATTTATAGAGACTTCAAGGCCTCAAATATATTGCTGGATGGGTCCTATAATGCCAAGATATCGGACTTTGGCTTGGCGAAAATGGGTCCCTCAGCTAGTCAATCACACGTTACAACACGGGTTATGGGAACTTATGGCTATGCTGCTCCAGAATATGTGGCCACAGGGCATTTGTACGTGAAGAGCGACGTGTATGGTTTTGGTGTTGTAATGGTAGAAATGCTGACAGGCTTACGTGCACTCGATACAAACCGGCCTAGTGGTCAACATAATCTAGTTGACTGGGTGAAACCATTTTTATTTGACAGAAGAAAGTTGAAGACCATAATGGACTCTAGGTTGGAAGGGAAATATCCTTCAAAAGCCGCTGGACTGGTTTCCCAGCTCGCCCTAACGTGCCTTGGACCTGAACCCAAAACGAGGCCTTCAATGAGACAAGTAGTGGATACACTTGAACGACTCGAGTCAGTTAGCGAAAGGCCAAAAAAGCCCAGAGTAAATTCTGTAAATAACACGCGAAATAGACATGTGCAGCAACCTTTGCAGTATCGTTCTTCACTTCACCCGAGGCATGATGCAAATGGGGCCCACCAACGGTCACCACAACAAGCATCGTAA

Network for GWHGAAZE018263

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF07714.18	PK_Tyr_Ser-Thr	84	361	6.80E-46

Protein Sequence

Gene family

Gene family	subfamily
Protein Kinases Family	RLK-Pelle_RLCK-VIIa-2

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0006468	biological_process	protein phosphorylation
GO:0004672	molecular_function	protein kinase activity
GO:0005524	molecular_function	ATP binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	16.049
	SRR3591706	second leaf	4.330
	SRR3591707	mature leaf	8.998
	SRR3591708	Shoot apex	8.515
	SRR3591709	Stem	22.209
	SRR3591710	White floral bud	4.907
	SRR3591711	White flower	14.846
	SRR3591712	Green floral bud	5.095
	SRR3591713	Yellow flower	13.520
SRP173429	SRR8316895	Juvenile bud stage	20.511
	SRR8316896	Juvenile bud stage	14.522
	SRR8316897	Juvenile bud stage	16.983
	SRR8316894	Third green stage	3.805
	SRR8316900	Third green stage	5.037
	SRR8316901	Third green stage	7.188
	SRR8316898	Complete white stage	1.145
	SRR8316899	Complete white stage	20.025
	SRR8316903	Complete white stage	1.892
	SRR8316902	Silver flowering stage	4.869
	SRR8316904	Silver flowering stage	4.996
	SRR8316905	Silver flowering stage	2.803
	SRR8316906	Gold flowering stage	16.376
	SRR8316907	Gold flowering stage	15.686
	SRR8316908	Gold flowering stage	27.381
SRP132670	SRR6706286	Control	6.069
	SRR6706287	Light intensity 50%	8.700
	SRR6706288	Light intensity 20%	5.409
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	16.033
	CNS0095593	Slightly white alabastrum(diploid) 2	16.508
	CNS0095594	Slightly white alabastrum(diploid) 3	17.900
	CNS0095595	Whole white alabastrum(diploid) 2	12.394
	CNS0095596	Whole white alabastrum(diploid) 3	1.514
	CNS0095597	Whole white alabastrum(diploid) 4	8.420
	CNS0095598	Silvery flower (diploied) 1	35.677
	CNS0095599	Silvery flower (diploied) 2	20.953
	CNS0095600	Silvery flower (diploied) 3	16.145
	CNS0095601	Golden flower (diploid) 1	31.350
	CNS0095602	Golden flower (diploid) 2	25.811
	CNS0095603	Golden flower (diploid) 3	26.860
	CNS0095604	Slightly white alabastrum(tetraploid) 1	0.750
	CNS0095605	Slightly white alabastrum(tetraploid) 2	1.159
	CNS0095606	Slightly white alabastrum(tetraploid) 3	2.834
	CNS0095607	Whole white alabastrum(tetraploid) 1	0.777
	CNS0095608	Whole white alabastrum(tetraploid) 2	0.603
	CNS0095609	Whole white alabastrum(tetraploid) 3	0.825
	CNS0095610	Silvery flower (tetraploid) 1	6.080
	CNS0095611	Silvery flower (tetraploid) 2	2.437
	CNS0095612	Silvery flower (tetraploid) 3	4.003
	CNS0095613	Golden flower (tetraploid) 1	5.984
	CNS0095614	Golden flower (tetraploid) 2	7.139
	CNS0095615	Golden flower (tetraploid) 3	3.814
CRA001975	CRR073297	Stem 1	9.443
	CRR073298	Stem 2	7.093
	CRR073299	Stem 3	6.883
	CRR073300	Leaf 1	7.550
	CRR073301	Leaf 2	7.374
	CRR073302	Leaf 3	3.584
	CRR073303	Juvenile bud 1	6.137
	CRR073304	Juvenile bud 2	3.353
	CRR073305	Juvenile bud 3	5.660
	CRR073306	Third green 1	3.542
	CRR073307	Third green 2	2.401
	CRR073308	Third green 3	3.290
	CRR073309	Second white 1	2.170
	CRR073310	Second white 2	5.525
	CRR073311	Second white 3	5.491
	CRR073312	Silver flowering 1	21.869
	CRR073313	Silver flowering 2	12.190
	CRR073314	Silver flowering 3	9.366
	CRR073315	Gold flowering 1	30.291
	CRR073316	Gold flowering 2	46.966
	CRR073317	Gold flowering 3	21.895
	CRR073318	Tawny withering 1	20.609
	CRR073319	Tawny withering 2	36.709
	CRR073320	Tawny withering 3	14.013