Detail information of GWHGAAZE018259


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrCAC80702.10N-acetylglucosaminyltransferase I [Nicotiana tabacum]
Swissprottr|Q9XGM8|MGAT1_ARATH3E-164Alpha-1,3-mannosyl-glycoprotein 2-beta-N-acetylglucosaminyltransferase
trEMBLtr|Q8VXD3|Q8VXD3_TOBAC0N-acetylglucosaminyltransferase I {ECO:0000313|EMBL:CAC80702.1}
TAIR10AT4G38240.22E-125alpha-1,3-mannosyl-glycoprotein beta-1,2-N-acetylglucosaminyltransferase, putative

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000005gene1715093317154166-
GWHAAZE00000005mRNA1715093317154166-
GWHAAZE00000005exon1715409817154166-
GWHAAZE00000005exon1715350517153555-
GWHAAZE00000005exon1715314617153233-
GWHAAZE00000005exon1715281817152880-
GWHAAZE00000005exon1715240217152436-
GWHAAZE00000005exon1715223017152306-
GWHAAZE00000005exon1715208617152131-
GWHAAZE00000005exon1715190217151964-
GWHAAZE00000005exon1715174117151807-
GWHAAZE00000005exon1715158717151655-
GWHAAZE00000005exon1715141917151488-
GWHAAZE00000005exon1715117717151238-
GWHAAZE00000005exon1715093317151042-
GWHAAZE00000005CDS1715409817154166-
GWHAAZE00000005CDS1715350517153555-
GWHAAZE00000005CDS1715314617153233-
GWHAAZE00000005CDS1715281817152880-
GWHAAZE00000005CDS1715240217152436-
GWHAAZE00000005CDS1715223017152306-
GWHAAZE00000005CDS1715208617152131-
GWHAAZE00000005CDS1715190217151964-
GWHAAZE00000005CDS1715174117151807-
GWHAAZE00000005CDS1715158717151655-
GWHAAZE00000005CDS1715141917151488-
GWHAAZE00000005CDS1715117717151238-
GWHAAZE00000005CDS1715093317151042-
Transcript Sequence

Network for GWHGAAZE018259

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF03071.16GNT-I142857.10E-114
Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
K00726MGAT1 Metabolic pathways map01100
N-Glycan biosynthesismap00510
Various types of N-glycan biosynthesismap00513

Gene Ontology

GO term OntologyName
GO:0006486biological_processprotein glycosylation
GO:0008375molecular_functionacetylglucosaminyltransferase activity

Expression pattern

Created with Highcharts 5.0.4Chart context menuExpression pattern for GWHGAAZE018259.youngest leafsecond leafmature leafShoot apexStemWhite floral budWhite flowerGreen floral budYellow flowerJuvenile bud stage 1Juvenile bud stage 2Juvenile bud stage 3Third green stage 1Third green stage 2Third green stage 3Complete white stage 1Complete white stage 2Complete white stage 3Silver flowering stage 1Silver flowering stage 2Silver flowering stage 3Gold flowering stage 1Gold flowering stage 2Gold flowering stage 3Control 1Light intensity 50%Light intensity 20%Slightly white alabastrum(diploid) 1Slightly white alabastrum(diploid) 2Slightly white alabastrum(diploid) 3Whole white alabastrum(diploid) 1Whole white alabastrum(diploid) 2Whole white alabastrum(diploid) 3Silvery flower (diploied) 1Silvery flower (diploied) 2Silvery flower (diploied) 3Golden flower (diploid) 1Golden flower (diploid) 2Golden flower (diploid) 3Slightly white alabastrum(tetraploid) 1Slightly white alabastrum(tetraploid) 2Slightly white alabastrum(tetraploid) 3Whole white alabastrum(tetraploid) 1Whole white alabastrum(tetraploid) 2Whole white alabastrum(tetraploid) 3Silvery flower (tetraploid) 1Silvery flower (tetraploid) 2Silvery flower (tetraploid) 3Golden flower (tetraploid) 1Golden flower (tetraploid) 2Golden flower (tetraploid) 3Stem 1Stem 2Stem 3Leaf 1Leaf 2Leaf 3Juvenile bud 1Juvenile bud 2Juvenile bud 3Third green 1Third green 2Third green 3Second white 1Second white 2Second white 3Silver flowering 1Silver flowering 2Silver flowering 3Gold flowering 1Gold flowering 2Gold flowering 3Tawny withering 1Tawny withering 2Tawny withering 30510152025303540455055Highcharts.com

Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf48.413
SRR3591706second leaf17.002
SRR3591707mature leaf13.129
SRR3591708Shoot apex23.556
SRR3591709Stem34.857
SRR3591710White floral bud43.241
SRR3591711White flower41.100
SRR3591712Green floral bud43.178
SRR3591713Yellow flower42.034
SRP173429 SRR8316895Juvenile bud stage 19.399
SRR8316896Juvenile bud stage 28.320
SRR8316897Juvenile bud stage 15.731
SRR8316894Third green stage 11.760
SRR8316900Third green stage 35.701
SRR8316901Third green stage 31.855
SRR8316898Complete white stage 16.020
SRR8316899Complete white stage 47.256
SRR8316903Complete white stage 21.665
SRR8316902Silver flowering stage10.811
SRR8316904Silver flowering stage20.935
SRR8316905Silver flowering stage8.939
SRR8316906Gold flowering stage 27.363
SRR8316907Gold flowering stage 24.872
SRR8316908Gold flowering stage 23.791
SRP132670SRR6706286Control23.807
SRR6706287Light intensity 50%23.818
SRR6706288Light intensity 20%26.849
CNP0000432CNS0095592Slightly white alabastrum(diploid) 116.536
CNS0095593Slightly white alabastrum(diploid) 216.339
CNS0095594Slightly white alabastrum(diploid) 318.076
CNS0095595Whole white alabastrum(diploid) 218.945
CNS0095596Whole white alabastrum(diploid) 317.874
CNS0095597Whole white alabastrum(diploid) 416.121
CNS0095598Silvery flower (diploied) 115.301
CNS0095599Silvery flower (diploied) 211.639
CNS0095600Silvery flower (diploied) 325.941
CNS0095601Golden flower (diploid) 113.520
CNS0095602Golden flower (diploid) 225.259
CNS0095603Golden flower (diploid) 320.409
CNS0095604Slightly white alabastrum(tetraploid) 129.407
CNS0095605Slightly white alabastrum(tetraploid) 229.851
CNS0095606Slightly white alabastrum(tetraploid) 344.358
CNS0095607Whole white alabastrum(tetraploid) 126.962
CNS0095608Whole white alabastrum(tetraploid) 222.461
CNS0095609Whole white alabastrum(tetraploid) 339.077
CNS0095610Silvery flower (tetraploid) 132.194
CNS0095611Silvery flower (tetraploid) 231.000
CNS0095612Silvery flower (tetraploid) 336.456
CNS0095613Golden flower (tetraploid) 112.161
CNS0095614Golden flower (tetraploid) 226.989
CNS0095615Golden flower (tetraploid) 314.835
CRA001975CRR073297Stem 118.169
CRR073298Stem 217.967
CRR073299Stem 313.615
CRR073300Leaf 124.139
CRR073301Leaf 219.657
CRR073302Leaf 322.535
CRR073303Juvenile bud 117.478
CRR073304Juvenile bud 218.485
CRR073305Juvenile bud 322.553
CRR073306Third green 110.869
CRR073307Third green 213.052
CRR073308Third green 312.945
CRR073309Second white 110.295
CRR073310Second white 29.369
CRR073311Second white 39.072
CRR073312Silver flowering 18.378
CRR073313Silver flowering 24.520
CRR073314Silver flowering 35.469
CRR073315Gold flowering 19.242
CRR073316Gold flowering 213.431
CRR073317Gold flowering 37.509
CRR073318Tawny withering 128.189
CRR073319Tawny withering 220.028
CRR073320Tawny withering 323.093