Gene detail

Detail information of GWHGAAZE018241

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_006364334.1	1.6027E-172	PREDICTED: AT-rich interactive domain-containing protein 3-like isoform X1 [Solanum tuberosum]
Swissprot	tr\|Q940Y3\|ARID3_ARATH	1E-110	AT-rich interactive domain-containing protein 3
trEMBL	tr\|A0A068V1U1\|A0A068V1U1_COFCA	9E-159	Coffea canephora DH200=94 genomic scaffold, scaffold_87 {ECO:0000313\|EMBL:CDP14479.1}
TAIR10	AT2G17410.1	2E-93	ARID/BRIGHT DNA-binding domain-containing protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000005	gene	17002961	17011701	+
GWHAAZE00000005	mRNA	17002961	17011701	+
GWHAAZE00000005	exon	17002961	17003841	+
GWHAAZE00000005	exon	17003936	17003975	+
GWHAAZE00000005	exon	17006430	17006522	+
GWHAAZE00000005	exon	17007436	17007558	+
GWHAAZE00000005	exon	17007690	17007741	+
GWHAAZE00000005	exon	17007829	17007904	+
GWHAAZE00000005	exon	17009246	17009312	+
GWHAAZE00000005	exon	17009410	17009460	+
GWHAAZE00000005	exon	17010260	17010352	+
GWHAAZE00000005	exon	17011597	17011701	+
GWHAAZE00000005	CDS	17002961	17003841	+
GWHAAZE00000005	CDS	17003936	17003975	+
GWHAAZE00000005	CDS	17006430	17006522	+
GWHAAZE00000005	CDS	17007436	17007558	+
GWHAAZE00000005	CDS	17007690	17007741	+
GWHAAZE00000005	CDS	17007829	17007904	+
GWHAAZE00000005	CDS	17009246	17009312	+
GWHAAZE00000005	CDS	17009410	17009460	+
GWHAAZE00000005	CDS	17010260	17010352	+
GWHAAZE00000005	CDS	17011597	17011701	+

Transcript Sequence
>GWHTAAZE018263 ATGGAAGGTAATCCCGAATCCCTCAAAGATGCTCAGGGTGCTGCTGTTGATAATGATGGCGATGTTAAGGTGACAGACAAAGAGTTAGAAAAAGGTGAATCTTCCCACCTGGAGGACGTACAAGGTCAAAAGCAAGAATCTTCTAAGTCCAAAGACATCGAAGTTGAAAGTGAGAAATTGCCAGGCTCAGAGAGTGGAGGATTTGACAAGGAGGAATTGCCTCACTGTGAGGATGGGCAAGTCGCAGTTGAATTGCCTAAGGATAGTTGTTTGGTTGAGAATAAATGCTTGGTTGAACCTACTGTCGTTGAATCCGTTGTTGATGGCATTAGCAGTGATATACATGGAGAGAATAGGGACACCGATTCTGCAAATTTGGATACACAGAATCATTCAGACTCTGCCGCACCCAATGAGAATCTTTTGGATAAAAATGCAAAAGAAGAGAAGGGTGAGGAGTTGGACAACGGGATGAAGGGAACCAAGGAGGAGGAATTGGAAAATGGGTCGACAGGAATGGATTCCAGTCCAAACATTGAGTTTAAGGAGGAAGAATTGAACAATGGAGCTACGGGGTCAGAGTTGCTTCCTGCAAATAAAACAGAGGAGGAGCTGAATGAAGGGGTGATGGGGATGGAGATTCTACCTTACAATGAAGTGGCAGATGAATTGCTGAAGCCAGAAGTGGATGCTGGTCATGAGGTTGATGTGAAGACCAATAGCAGGTCATTTCTTTTGGAACCAGATGCTGACTTCGCCGACGAAGCTGGAACAGAGGAAGAGCAAGTGGAGTTTATGAAGGAGCTAGAAACTTTCCACAAAGAGAGGTGCTTGGAATTCAAGCCCCCAAAGTTCTACGGAGAGCCGTTAAATTGCCTCAAGTTATGGAGATCAGTGGTCAGACTTGGTGGCTATGAACAGGCATTACTTGAATATGAAAAGCATAAAATGCGTTGCGGTGAACTCCCTTTCACTGATGTTGCTTCTACAGAACCAGCCAGTGCTGGAAATCAGGCCTGTCTTAATCAAGCTTCAGGATCAGGGAGAGCAAGAAGAGATGCCGCAGCTCGTGCTATGCAGGGCTGGCACTCTCAGCGTCTTCTTGGTAATGGTGAGGTTGGTGACCCAATCATCAAGGATAAAAATCCGACTTCTATGCCTAAGCGTGAAAAGCAGCTTAAAAGCATTGGTTTGCTAAAGCGGAAAAAGCCATCACCTGTTGAGCGGGCTGTCAAAGTTGCACGTATGAAAGCATCAAGCCCACAGTTGGAAACGATGGTTATTGATATTGGCCCTCCTGCTGATTGGGTGAAGGTCAATGTTCAGAGAACTAGAGACTGCTTTGAGGTATATGCTTTAGTTCCTGGTCTCCTCCGTGAGGAGGTGCGTGTGCAGTCGGATCCAGTGGGGCGCTTGGTTATATCTGGTCAACCAGAGCAACTGGATAATCCTTGGGGCGTTACTCCATTTAAAAAGGTTGTGAGCTTGCCTTCTAGGATTGATCCTCATCAGACATCTGCTGTGGTTACCTTGCACGGCCAGTTGTTTGTGCGTGTACCATTCGAGCAGTCCGATCTTTAG

Network for GWHGAAZE018241

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF01388.22	ARID	262	308	6.10E-07
PF00011.22	HSP20	442	523	5.60E-05

Protein Sequence

Gene family

Gene family	subfamily
Transcription Factors Family	ARID

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0003677	molecular_function	DNA binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	16.559
	SRR3591706	second leaf	16.152
	SRR3591707	mature leaf	12.357
	SRR3591708	Shoot apex	33.210
	SRR3591709	Stem	14.624
	SRR3591710	White floral bud	14.186
	SRR3591711	White flower	17.311
	SRR3591712	Green floral bud	14.550
	SRR3591713	Yellow flower	12.508
SRP173429	SRR8316895	Juvenile bud stage	15.111
	SRR8316896	Juvenile bud stage	20.629
	SRR8316897	Juvenile bud stage	10.674
	SRR8316894	Third green stage	8.448
	SRR8316900	Third green stage	13.065
	SRR8316901	Third green stage	17.126
	SRR8316898	Complete white stage	5.361
	SRR8316899	Complete white stage	19.985
	SRR8316903	Complete white stage	10.934
	SRR8316902	Silver flowering stage	6.229
	SRR8316904	Silver flowering stage	9.041
	SRR8316905	Silver flowering stage	4.205
	SRR8316906	Gold flowering stage	14.841
	SRR8316907	Gold flowering stage	15.736
	SRR8316908	Gold flowering stage	15.870
SRP132670	SRR6706286	Control	12.976
	SRR6706287	Light intensity 50%	14.810
	SRR6706288	Light intensity 20%	14.765
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	12.174
	CNS0095593	Slightly white alabastrum(diploid) 2	11.390
	CNS0095594	Slightly white alabastrum(diploid) 3	10.987
	CNS0095595	Whole white alabastrum(diploid) 2	10.148
	CNS0095596	Whole white alabastrum(diploid) 3	8.489
	CNS0095597	Whole white alabastrum(diploid) 4	8.818
	CNS0095598	Silvery flower (diploied) 1	17.679
	CNS0095599	Silvery flower (diploied) 2	15.929
	CNS0095600	Silvery flower (diploied) 3	16.276
	CNS0095601	Golden flower (diploid) 1	16.760
	CNS0095602	Golden flower (diploid) 2	16.128
	CNS0095603	Golden flower (diploid) 3	15.334
	CNS0095604	Slightly white alabastrum(tetraploid) 1	15.904
	CNS0095605	Slightly white alabastrum(tetraploid) 2	11.015
	CNS0095606	Slightly white alabastrum(tetraploid) 3	24.669
	CNS0095607	Whole white alabastrum(tetraploid) 1	10.261
	CNS0095608	Whole white alabastrum(tetraploid) 2	7.916
	CNS0095609	Whole white alabastrum(tetraploid) 3	12.703
	CNS0095610	Silvery flower (tetraploid) 1	14.525
	CNS0095611	Silvery flower (tetraploid) 2	15.592
	CNS0095612	Silvery flower (tetraploid) 3	14.524
	CNS0095613	Golden flower (tetraploid) 1	9.199
	CNS0095614	Golden flower (tetraploid) 2	13.308
	CNS0095615	Golden flower (tetraploid) 3	14.918
CRA001975	CRR073297	Stem 1	32.726
	CRR073298	Stem 2	31.997
	CRR073299	Stem 3	32.738
	CRR073300	Leaf 1	24.994
	CRR073301	Leaf 2	24.347
	CRR073302	Leaf 3	18.104
	CRR073303	Juvenile bud 1	13.257
	CRR073304	Juvenile bud 2	11.437
	CRR073305	Juvenile bud 3	15.708
	CRR073306	Third green 1	6.163
	CRR073307	Third green 2	5.553
	CRR073308	Third green 3	6.084
	CRR073309	Second white 1	4.130
	CRR073310	Second white 2	8.734
	CRR073311	Second white 3	7.661
	CRR073312	Silver flowering 1	9.694
	CRR073313	Silver flowering 2	7.946
	CRR073314	Silver flowering 3	7.978
	CRR073315	Gold flowering 1	14.477
	CRR073316	Gold flowering 2	25.954
	CRR073317	Gold flowering 3	15.115
	CRR073318	Tawny withering 1	19.981
	CRR073319	Tawny withering 2	19.948
	CRR073320	Tawny withering 3	24.585