Gene detail

Detail information of GWHGAAZE018229

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	CBI26398.3	0	unnamed protein product [Vitis vinifera]
Swissprot	tr\|Q9M9C5\|Y1680_ARATH	1E-88	Probable leucine-rich repeat receptor-like protein kinase At1g68400 (Precursor)
trEMBL	tr\|D7T7C7\|D7T7C7_VITVI	0	Putative uncharacterized protein {ECO:0000313\|EMBL:CBI26398.3}
TAIR10	AT1G68400.1	1E-71	leucine-rich repeat transmembrane protein kinase family protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000005	gene	16885542	16887264	+
GWHAAZE00000005	mRNA	16885542	16887264	+
GWHAAZE00000005	exon	16885542	16885719	+
GWHAAZE00000005	exon	16885820	16885857	+
GWHAAZE00000005	exon	16885964	16886522	+
GWHAAZE00000005	exon	16886636	16887264	+
GWHAAZE00000005	CDS	16885542	16885719	+
GWHAAZE00000005	CDS	16885820	16885857	+
GWHAAZE00000005	CDS	16885964	16886522	+
GWHAAZE00000005	CDS	16886636	16887264	+

Transcript Sequence
>GWHTAAZE018251 CCAACATTGAGGGATTTTAATGTGTCTTATAATCAACTTTCGGGTCAAATCCCGGAAACTAGTGTACTTGAGAGGTTTCCTAAAAGCTCTTTTGATCATAATTTGGATTTGTGTGGGAGTGTTGCGGGGATACCATGTCCTGTTTCTCCTGTTCCAGAGCCTTCTCCTTCAAGTAATGAAGAGTACATGATAAAGAAGCAAATGAGGTGCTATCAGGGACATAGTTGGAGGCACGATCTCCCTAACAAATCGGAGAATCAGTCAACAGACCCACCTCAAATCTCACAAAAATATTCTATTTCTAACCATATCTACTTTTCTCAAAATGCCTATTTCATTTTCAAATGCGCCTACGTGGTTCTTTATTTCATTTCATTTTCTTCTTTGAATTCCAATAGGGAGAGTTCTAAGGAGACTGTGGAAAAGAAAATGGATTTGGGTGATCCAGAAAGAACAGTAGAATTGCAATTCTTCAACAGGGAAACACCCGTGTTTGATTTGGATGATTTGCTGAGGGCATCTGCAGTGTTGCTTGGGAAGGGAAAACTAGGCACAACGTACAAAGCGATGCTGGAATCGGGTCTAGTTGTGGCTGTGAAGAGATTGAAGAATATGAGTGGGTTGAGCAAGAAGGAATTTATTCAGCAGATGCAGTTGCTTGGAAAGATGAGGCATGAAAACCTAGTGGAAATCATTTCCTTCTACTATTCCAAGGAGGAAAAGCTAGTCATCTATGAATATCTTCCCCATGGAAGCTTATTTGAACTATTACACGAGAACAGAGGAATTGGAAGAGTGCCACTAAACTGGACAAAAAGACTCTCAATCATCAAAGACATAGCAAAGGGCCTATCTTCGCTTCACCAAACCTTACCTTCACACAAGGTTCCTCATGCGAACCTCAAATCCTCAAATGTCTTCATCCACCGGCCCAACAATGAAAGCCACTACCATGCAAAGCTCTCCGACTTTGGCTTTTTACCTCTCTTGCCCTCTAGAAAGGCCTCAGAGAAGCTGGCAATAGCAAAATCCCCCGAGTTTTGTGATGGAAAGAAACTCACTTACAAAGCAGACGTATACTGCTTTGGGATCATACTTTTGGAGATCATAACGGGGAAAATCCCCGGCGAAATATCTGGCCAAGGGGATGATGAGGGAAGTGGTATTGGTGATCTCTCGGATTGGGTTAGGACCGTGGTGAACAATGATTGGTCGACGGATATATTGGATATGGAGATATTAGCTGCAAAAGATGGGCATAATGAGATGCTGAAGTTTACGGAGTTGGCGCTTGAGTGTACAGATATGGTGCCCGAGAAAAGGCCGAAGATGAGCCTAGTGTTGAGACGGATAGCGGAGATTGAGGTTAGTAGTCGTGAACAACAAAGAGAATCGGTTGAATAA

Network for GWHGAAZE018229

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00069.26	Pkinase	177	447	1.30E-31

Protein Sequence

Gene family

Gene family	subfamily
Protein Kinases Family	RLK-Pelle_LRR-III

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0006468	biological_process	protein phosphorylation
GO:0004672	molecular_function	protein kinase activity
GO:0005524	molecular_function	ATP binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	0.537
	SRR3591706	second leaf	0.144
	SRR3591707	mature leaf	0.105
	SRR3591708	Shoot apex	0.051
	SRR3591709	Stem	0.770
	SRR3591710	White floral bud	0.330
	SRR3591711	White flower	0.151
	SRR3591712	Green floral bud	0.280
	SRR3591713	Yellow flower	0.084
SRP173429	SRR8316895	Juvenile bud stage	0.000
	SRR8316896	Juvenile bud stage	0.216
	SRR8316897	Juvenile bud stage	0.000
	SRR8316894	Third green stage	0.181
	SRR8316900	Third green stage	0.497
	SRR8316901	Third green stage	0.674
	SRR8316898	Complete white stage	0.000
	SRR8316899	Complete white stage	0.255
	SRR8316903	Complete white stage	0.000
	SRR8316902	Silver flowering stage	0.063
	SRR8316904	Silver flowering stage	0.039
	SRR8316905	Silver flowering stage	0.041
	SRR8316906	Gold flowering stage	0.058
	SRR8316907	Gold flowering stage	0.100
	SRR8316908	Gold flowering stage	0.000
SRP132670	SRR6706286	Control	0.072
	SRR6706287	Light intensity 50%	0.085
	SRR6706288	Light intensity 20%	0.202
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	0.171
	CNS0095593	Slightly white alabastrum(diploid) 2	0.457
	CNS0095594	Slightly white alabastrum(diploid) 3	0.294
	CNS0095595	Whole white alabastrum(diploid) 2	0.143
	CNS0095596	Whole white alabastrum(diploid) 3	0.000
	CNS0095597	Whole white alabastrum(diploid) 4	0.262
	CNS0095598	Silvery flower (diploied) 1	0.000
	CNS0095599	Silvery flower (diploied) 2	0.000
	CNS0095600	Silvery flower (diploied) 3	0.000
	CNS0095601	Golden flower (diploid) 1	0.022
	CNS0095602	Golden flower (diploid) 2	0.000
	CNS0095603	Golden flower (diploid) 3	0.021
	CNS0095604	Slightly white alabastrum(tetraploid) 1	0.127
	CNS0095605	Slightly white alabastrum(tetraploid) 2	0.438
	CNS0095606	Slightly white alabastrum(tetraploid) 3	0.270
	CNS0095607	Whole white alabastrum(tetraploid) 1	0.126
	CNS0095608	Whole white alabastrum(tetraploid) 2	0.017
	CNS0095609	Whole white alabastrum(tetraploid) 3	0.043
	CNS0095610	Silvery flower (tetraploid) 1	0.028
	CNS0095611	Silvery flower (tetraploid) 2	0.000
	CNS0095612	Silvery flower (tetraploid) 3	0.030
	CNS0095613	Golden flower (tetraploid) 1	0.032
	CNS0095614	Golden flower (tetraploid) 2	0.000
	CNS0095615	Golden flower (tetraploid) 3	0.000
CRA001975	CRR073297	Stem 1	0.164
	CRR073298	Stem 2	0.059
	CRR073299	Stem 3	0.060
	CRR073300	Leaf 1	0.160
	CRR073301	Leaf 2	0.108
	CRR073302	Leaf 3	0.292
	CRR073303	Juvenile bud 1	0.123
	CRR073304	Juvenile bud 2	0.000
	CRR073305	Juvenile bud 3	0.133
	CRR073306	Third green 1	0.000
	CRR073307	Third green 2	0.000
	CRR073308	Third green 3	0.204
	CRR073309	Second white 1	0.000
	CRR073310	Second white 2	0.000
	CRR073311	Second white 3	0.000
	CRR073312	Silver flowering 1	0.000
	CRR073313	Silver flowering 2	0.000
	CRR073314	Silver flowering 3	0.000
	CRR073315	Gold flowering 1	0.000
	CRR073316	Gold flowering 2	0.259
	CRR073317	Gold flowering 3	0.000
	CRR073318	Tawny withering 1	0.696
	CRR073319	Tawny withering 2	0.183
	CRR073320	Tawny withering 3	0.468