Gene detail

Detail information of GWHGAAZE018217

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_002278511.1	8.2444E-124	PREDICTED: protein sym-1 [Vitis vinifera]
Swissprot	tr\|Q9ZS51\|PMP22_ARATH	3E-12	Peroxisomal membrane protein PMP22
trEMBL	tr\|D7TQ41\|D7TQ41_VITVI	3E-124	Putative uncharacterized protein {ECO:0000313\|EMBL:CBI32848.3}
TAIR10	AT5G19750.1	5E-61	Peroxisomal membrane 22 kDa (Mpv17/PMP22) family protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000005	gene	16764781	16771393	+
GWHAAZE00000005	mRNA	16764781	16771393	+
GWHAAZE00000005	exon	16764781	16765154	+
GWHAAZE00000005	exon	16766918	16767005	+
GWHAAZE00000005	exon	16767522	16767616	+
GWHAAZE00000005	exon	16767991	16768063	+
GWHAAZE00000005	exon	16768185	16768277	+
GWHAAZE00000005	exon	16768392	16768478	+
GWHAAZE00000005	exon	16769184	16769264	+
GWHAAZE00000005	exon	16770530	16770579	+
GWHAAZE00000005	exon	16771118	16771393	+
GWHAAZE00000005	CDS	16764781	16765154	+
GWHAAZE00000005	CDS	16766918	16767005	+
GWHAAZE00000005	CDS	16767522	16767616	+
GWHAAZE00000005	CDS	16767991	16768063	+
GWHAAZE00000005	CDS	16768185	16768277	+
GWHAAZE00000005	CDS	16768392	16768478	+
GWHAAZE00000005	CDS	16769184	16769264	+
GWHAAZE00000005	three_prime_UTR	16770530	16770579	+
GWHAAZE00000005	three_prime_UTR	16771118	16771393	+

Transcript Sequence
>GWHTAAZE018239 ATGGTTTCAAACCCTGTAACCCTTGCCCGTAAATCCCCACTCTTGTTCCGCTTTGTGGGATTATCTCGCACTCCCACTTCGCGTTATGGCAATTCCGCCGTAATTCAACTTCAAACAAGTGGTTTTAGGAGATCTTCTTCGTGCACTTACCTCCCAAACCCTCTCAGTTGTTATACTCTCGGCAACACTGCGTTCAAAGAATTCAGTCGCGGGGAATTAGGGTTTAAACAGTTGGGTTATGGTTCTTTTCGGATTTCGGCTGTTTCAGACGGTGGTTCCGGCGGAACTGGCGGTTCCGGTGATGGAAATTCTGGTGGGAGTGGTAGCGGTAGCGGTGGCGGTGGTGGCAGGAGCAACTGGTCGTTGCTTTCGTGGTATTTGAATCTTCTTGAGAAGTATCCCGTGTGGACAAAGGCAGTGACTTCTGCAATGTTGACTTTTGTTGGAGATTTGATCTGCCAGCTTGCAATTGACCAAGTGCCATCTCTAGACCTGAAGAGGATATTCCTTTTCACTTTTTTGGGGCTGACATTGGTGGGGCCCACACTGCACTTCTGGTATTTGTATCTGAGTAAACTGGTTACAATGCCTGGAGCAGCAGGTGCTTTCTTGCGCCTTCTAGTTGATCAGTTCATCTTTGCTCCTATATTCATTGGAATTTTCTTATCTACATTAATGACACTAGAGGGGAGGCCATCAGAAGTGATACCAAAGCTTCAACAGGAGTGGTTGTCTTCTGTTATTGCAAATTGGCAACTGTGGATACCTTTCCAATTTCTCAACTTTCGATTTGTACCACAACAATTCCAGGTCCTTGCTGCCAACTTTATTGCTCTAGTATGGAATGTGATTCTCTCGTACAAAGCTCACAAAGAAGTTATCGCAAAATAGTTTGGAGTGAGTATCTTGCTTAGAAGGCTGCTGAACCAAATGAGCTGTGGAGGTAGAATAAGTGTATTTTTCTCGCAAATGAAATGAGGAGGAAAGCAATGGTTTAAATGGAACATGGTTGCGGAAGGTTCAAAGAAATACATCTTTGTGGAAAGTCTTTGGGTTCTTTGGACTATTTTTGGTTTGCTTAGTAAAATAATCGAACCACCTGGCTAATGGCCTTTGATGATGACTTATGTACCGTGTTTTTGTATTCCATTCAATACCTTCTTTCCTCGAAGCTATGATTGTGTTCGTTCGTGTGACGTAAAATGTGTAATGACAAG

Network for GWHGAAZE018217

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF04117.13	Mpv17_PMP22	227	286	9.00E-21

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K13347	PXMP2, PMP22	Peroxisome	map04146

Gene Ontology

GO term	Ontology	Name
GO:0016021	cellular_component	integral component of membrane

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	10.409
	SRR3591706	second leaf	5.799
	SRR3591707	mature leaf	4.263
	SRR3591708	Shoot apex	20.455
	SRR3591709	Stem	11.321
	SRR3591710	White floral bud	6.737
	SRR3591711	White flower	11.348
	SRR3591712	Green floral bud	11.013
	SRR3591713	Yellow flower	8.172
SRP173429	SRR8316895	Juvenile bud stage	14.302
	SRR8316896	Juvenile bud stage	22.881
	SRR8316897	Juvenile bud stage	10.281
	SRR8316894	Third green stage	6.719
	SRR8316900	Third green stage	17.745
	SRR8316901	Third green stage	16.361
	SRR8316898	Complete white stage	2.266
	SRR8316899	Complete white stage	14.152
	SRR8316903	Complete white stage	5.120
	SRR8316902	Silver flowering stage	5.281
	SRR8316904	Silver flowering stage	5.199
	SRR8316905	Silver flowering stage	2.735
	SRR8316906	Gold flowering stage	10.102
	SRR8316907	Gold flowering stage	11.122
	SRR8316908	Gold flowering stage	10.759
SRP132670	SRR6706286	Control	9.681
	SRR6706287	Light intensity 50%	9.613
	SRR6706288	Light intensity 20%	10.357
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	18.422
	CNS0095593	Slightly white alabastrum(diploid) 2	14.280
	CNS0095594	Slightly white alabastrum(diploid) 3	17.885
	CNS0095595	Whole white alabastrum(diploid) 2	13.283
	CNS0095596	Whole white alabastrum(diploid) 3	14.189
	CNS0095597	Whole white alabastrum(diploid) 4	8.130
	CNS0095598	Silvery flower (diploied) 1	9.583
	CNS0095599	Silvery flower (diploied) 2	9.138
	CNS0095600	Silvery flower (diploied) 3	10.282
	CNS0095601	Golden flower (diploid) 1	6.362
	CNS0095602	Golden flower (diploid) 2	9.275
	CNS0095603	Golden flower (diploid) 3	8.704
	CNS0095604	Slightly white alabastrum(tetraploid) 1	17.686
	CNS0095605	Slightly white alabastrum(tetraploid) 2	11.482
	CNS0095606	Slightly white alabastrum(tetraploid) 3	15.061
	CNS0095607	Whole white alabastrum(tetraploid) 1	7.806
	CNS0095608	Whole white alabastrum(tetraploid) 2	7.478
	CNS0095609	Whole white alabastrum(tetraploid) 3	11.626
	CNS0095610	Silvery flower (tetraploid) 1	10.456
	CNS0095611	Silvery flower (tetraploid) 2	9.541
	CNS0095612	Silvery flower (tetraploid) 3	6.477
	CNS0095613	Golden flower (tetraploid) 1	5.670
	CNS0095614	Golden flower (tetraploid) 2	8.261
	CNS0095615	Golden flower (tetraploid) 3	5.149
CRA001975	CRR073297	Stem 1	11.525
	CRR073298	Stem 2	11.928
	CRR073299	Stem 3	14.321
	CRR073300	Leaf 1	9.764
	CRR073301	Leaf 2	10.246
	CRR073302	Leaf 3	10.062
	CRR073303	Juvenile bud 1	7.635
	CRR073304	Juvenile bud 2	5.644
	CRR073305	Juvenile bud 3	9.647
	CRR073306	Third green 1	1.446
	CRR073307	Third green 2	1.548
	CRR073308	Third green 3	2.528
	CRR073309	Second white 1	5.492
	CRR073310	Second white 2	3.254
	CRR073311	Second white 3	3.924
	CRR073312	Silver flowering 1	1.826
	CRR073313	Silver flowering 2	5.761
	CRR073314	Silver flowering 3	4.025
	CRR073315	Gold flowering 1	9.571
	CRR073316	Gold flowering 2	9.531
	CRR073317	Gold flowering 3	6.672
	CRR073318	Tawny withering 1	11.043
	CRR073319	Tawny withering 2	7.812
	CRR073320	Tawny withering 3	12.618