Detail information of GWHGAAZE018201


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrXP_002527680.10glutamate decarboxylase, putative [Ricinus communis]
Swissprottr|P54767|DCE_SOLLC7E-178Glutamate decarboxylase
trEMBLtr|B9SNW1|B9SNW1_RICCO0Glutamate decarboxylase {ECO:0000256|RuleBase:RU361171}
TAIR10AT5G17330.17E-128glutamate decarboxylase

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000005gene1653949616543173-
GWHAAZE00000005mRNA1653949616543173-
GWHAAZE00000005exon1654310016543173-
GWHAAZE00000005exon1654272716542913-
GWHAAZE00000005exon1654211116542188-
GWHAAZE00000005exon1654089516541363-
GWHAAZE00000005exon1654025316540305-
GWHAAZE00000005exon1653949616539684-
GWHAAZE00000005CDS1654310016543173-
GWHAAZE00000005CDS1654272716542913-
GWHAAZE00000005CDS1654211116542188-
GWHAAZE00000005CDS1654089516541363-
GWHAAZE00000005CDS1654025316540305-
GWHAAZE00000005CDS1653949616539684-
Transcript Sequence

Network for GWHGAAZE018201

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF00282.20Pyridoxal_deC291131.10E-11
PF00282.20Pyridoxal_deC1143109.50E-50
Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
K01580E4.1.1.15, gadB, gadA, GAD Metabolic pathways map01100
Biosynthesis of secondary metabolitesmap01110
Microbial metabolism in diverse environmentsmap01120
Butanoate metabolismmap00650
Alanine, aspartate and glutamate metabolismmap00250
beta-Alanine metabolismmap00410
Taurine and hypotaurine metabolismmap00430
Quorum sensingmap02024
GABAergic synapsemap04727

Gene Ontology

GO term OntologyName
GO:0019752biological_processcarboxylic acid metabolic process
GO:0003824molecular_functioncatalytic activity
GO:0016831molecular_functioncarboxy-lyase activity
GO:0030170molecular_functionpyridoxal phosphate binding

Expression pattern

Created with Highcharts 5.0.4Chart context menuExpression pattern for GWHGAAZE018201.youngest leafsecond leafmature leafShoot apexStemWhite floral budWhite flowerGreen floral budYellow flowerJuvenile bud stage 1Juvenile bud stage 2Juvenile bud stage 3Third green stage 1Third green stage 2Third green stage 3Complete white stage 1Complete white stage 2Complete white stage 3Silver flowering stage 1Silver flowering stage 2Silver flowering stage 3Gold flowering stage 1Gold flowering stage 2Gold flowering stage 3Control 1Light intensity 50%Light intensity 20%Slightly white alabastrum(diploid) 1Slightly white alabastrum(diploid) 2Slightly white alabastrum(diploid) 3Whole white alabastrum(diploid) 1Whole white alabastrum(diploid) 2Whole white alabastrum(diploid) 3Silvery flower (diploied) 1Silvery flower (diploied) 2Silvery flower (diploied) 3Golden flower (diploid) 1Golden flower (diploid) 2Golden flower (diploid) 3Slightly white alabastrum(tetraploid) 1Slightly white alabastrum(tetraploid) 2Slightly white alabastrum(tetraploid) 3Whole white alabastrum(tetraploid) 1Whole white alabastrum(tetraploid) 2Whole white alabastrum(tetraploid) 3Silvery flower (tetraploid) 1Silvery flower (tetraploid) 2Silvery flower (tetraploid) 3Golden flower (tetraploid) 1Golden flower (tetraploid) 2Golden flower (tetraploid) 3Stem 1Stem 2Stem 3Leaf 1Leaf 2Leaf 3Juvenile bud 1Juvenile bud 2Juvenile bud 3Third green 1Third green 2Third green 3Second white 1Second white 2Second white 3Silver flowering 1Silver flowering 2Silver flowering 3Gold flowering 1Gold flowering 2Gold flowering 3Tawny withering 1Tawny withering 2Tawny withering 300.250.50.7511.251.51.7522.252.52.7533.25Highcharts.com

Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf1.083
SRR3591706second leaf0.026
SRR3591707mature leaf0.000
SRR3591708Shoot apex0.150
SRR3591709Stem1.459
SRR3591710White floral bud1.163
SRR3591711White flower0.378
SRR3591712Green floral bud3.063
SRR3591713Yellow flower0.116
SRP173429 SRR8316895Juvenile bud stage 0.000
SRR8316896Juvenile bud stage 0.009
SRR8316897Juvenile bud stage 0.000
SRR8316894Third green stage 0.000
SRR8316900Third green stage 0.099
SRR8316901Third green stage 0.062
SRR8316898Complete white stage 0.000
SRR8316899Complete white stage 0.000
SRR8316903Complete white stage 0.000
SRR8316902Silver flowering stage0.000
SRR8316904Silver flowering stage0.000
SRR8316905Silver flowering stage0.000
SRR8316906Gold flowering stage 0.075
SRR8316907Gold flowering stage 0.000
SRR8316908Gold flowering stage 0.000
SRP132670SRR6706286Control0.308
SRR6706287Light intensity 50%0.152
SRR6706288Light intensity 20%0.190
CNP0000432CNS0095592Slightly white alabastrum(diploid) 10.066
CNS0095593Slightly white alabastrum(diploid) 20.152
CNS0095594Slightly white alabastrum(diploid) 30.000
CNS0095595Whole white alabastrum(diploid) 20.042
CNS0095596Whole white alabastrum(diploid) 30.128
CNS0095597Whole white alabastrum(diploid) 40.042
CNS0095598Silvery flower (diploied) 10.052
CNS0095599Silvery flower (diploied) 20.066
CNS0095600Silvery flower (diploied) 30.000
CNS0095601Golden flower (diploid) 10.417
CNS0095602Golden flower (diploid) 20.043
CNS0095603Golden flower (diploid) 30.059
CNS0095604Slightly white alabastrum(tetraploid) 10.000
CNS0095605Slightly white alabastrum(tetraploid) 20.000
CNS0095606Slightly white alabastrum(tetraploid) 30.000
CNS0095607Whole white alabastrum(tetraploid) 10.000
CNS0095608Whole white alabastrum(tetraploid) 20.000
CNS0095609Whole white alabastrum(tetraploid) 30.000
CNS0095610Silvery flower (tetraploid) 10.000
CNS0095611Silvery flower (tetraploid) 20.000
CNS0095612Silvery flower (tetraploid) 30.000
CNS0095613Golden flower (tetraploid) 10.000
CNS0095614Golden flower (tetraploid) 20.000
CNS0095615Golden flower (tetraploid) 30.002
CRA001975CRR073297Stem 10.151
CRR073298Stem 20.058
CRR073299Stem 30.000
CRR073300Leaf 10.178
CRR073301Leaf 20.187
CRR073302Leaf 30.299
CRR073303Juvenile bud 10.267
CRR073304Juvenile bud 20.085
CRR073305Juvenile bud 30.004
CRR073306Third green 10.041
CRR073307Third green 20.019
CRR073308Third green 30.036
CRR073309Second white 10.000
CRR073310Second white 20.000
CRR073311Second white 30.000
CRR073312Silver flowering 10.000
CRR073313Silver flowering 20.000
CRR073314Silver flowering 30.000
CRR073315Gold flowering 10.000
CRR073316Gold flowering 20.000
CRR073317Gold flowering 30.000
CRR073318Tawny withering 10.000
CRR073319Tawny withering 20.000
CRR073320Tawny withering 30.000