Gene detail

Detail information of GWHGAAZE018200

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	CDO98628.1	0	unnamed protein product [Coffea canephora]
trEMBL	tr\|A0A068TTG1\|A0A068TTG1_COFCA	0	Coffea canephora DH200=94 genomic scaffold, scaffold_2 {ECO:0000313\|EMBL:CDO98628.1}
TAIR10	AT5G22110.1	4E-176	DNA polymerase epsilon subunit B2

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000005	gene	16524437	16529256	-
GWHAAZE00000005	mRNA	16524437	16529256	-
GWHAAZE00000005	exon	16524437	16524577	-
GWHAAZE00000005	exon	16525186	16525296	-
GWHAAZE00000005	exon	16525381	16525495	-
GWHAAZE00000005	exon	16525756	16525855	-
GWHAAZE00000005	exon	16526155	16526249	-
GWHAAZE00000005	exon	16526342	16526477	-
GWHAAZE00000005	exon	16526778	16526859	-
GWHAAZE00000005	exon	16527974	16528054	-
GWHAAZE00000005	exon	16528179	16528286	-
GWHAAZE00000005	exon	16528394	16528547	-
GWHAAZE00000005	exon	16529051	16529256	-
GWHAAZE00000005	CDS	16529051	16529256	-
GWHAAZE00000005	CDS	16528394	16528547	-
GWHAAZE00000005	CDS	16528179	16528286	-
GWHAAZE00000005	CDS	16527974	16528054	-
GWHAAZE00000005	CDS	16526778	16526859	-
GWHAAZE00000005	CDS	16526342	16526477	-
GWHAAZE00000005	CDS	16526155	16526249	-
GWHAAZE00000005	CDS	16525756	16525855	-
GWHAAZE00000005	CDS	16525381	16525495	-
GWHAAZE00000005	CDS	16525186	16525296	-
GWHAAZE00000005	CDS	16524437	16524577	-

Transcript Sequence
>GWHTAAZE018222 ATGGCAGTAAAATCTTCAATACTGGACAAGGAACCGGTGAATCGAGTTGTTAACCTTCTATTGGAAGCCGAAGCAGCAGTGGAGGAAACCCCAACTACTCCTAATAGTGCTAGTACCAGTGGTAGTAACAAATCTGCACTCCGCATAATTGATGCATTCTTCATCCCAAAGTTCCGCTACGACCCCGTCAGAAAAATCTTCTACGAACCTACAGGGAGGCTTCCGATTCATGGTGATGCTTCTGCGAAAGCCACTTTGTACAGGGATAGGTTTCTATTGTTACTTCAGAGGCTTTCTCGTGATCCAAGTTTTACCAAGCCTGCATTTGATACCGAAGTGTCTCAGTTTGGGAGCTGTGAGATATCTCCGATTCAATCTCTGGTTGGGCGAATTGGCAGAAGCTGGGTCATTGGTGTAATATCACAGTTGGAAGATGGTCATTTCTACTTGGAAGATCTTACTGCAGCATACAAAATAACCACAGGTTTTTTCTCGGAAAACACTATAGTTTTAGCAGAAGGGGAGATGCTCTTGGATGGTATTTTTCAGGTTAAAACATGTGGATTTCCACCATTAGAGGACAGATATAAGTCACTTGCATTATTTTCTGGACTCGATTTCTTCGGTGGTGTGAAGACTCTGGGAAAGCTAGAGACTGTCCTAGATGGTTATGAAAGTGTAGAGGTGGTTCCTTCTCTATTTGTTTTCATGGGGAATTTCTGTTCACATCCCTGTAACCTTTCTTTTAATGCTTTCTCGAGTCTCAGGTTGCAGTTTGGAAAACTGGGACAAATGATTGCAAACCATCAACGGTTAAAAGATCACAGTAGGTTCTTGTTTATTCCTGGTCCTGATGATGCAGGTCCTTCAACTGTCCTACCCAGGTGTGCTTTGCCAAGATATATAACTGAAGAGCTTCAGAAATATATTCCAAATGCCATATTCTCAAGCAATCCTTGCAGAATCAAGTTTTATACCCAGGAAATAGTATTTTTCCGCCAGGATCTGCTTTATCGAATGCGCAGATCATGTTTGATGCCTCCTTCCACAGAAGAAACTAGTGACCCGTTCGAGCACCTTGTTGCTACCATAACACATCAAAGCCATCTGTGTCCCATCCCATTGAGTGTACAACCTATTATTTGGAATTATGATCATTGTCTCCACCTCTATCCAACTCCACACACAATAGTATTGGGTGACAGAAGTGAGCAGAAGGCTTTCAACTACACTGGAATTACGTGCTTTAATCCAGGTTCCTTCTCGAATGACAGTACTTTTGTGGCATATCGGCCTTGCACTCGGGAAGTTGAATTGTCAGCCTTGTAA

Network for GWHGAAZE018200

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF04042.17	DNA_pol_E_B	200	405	1.30E-46

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K02325	POLE2	DNA replication	map03030
		Base excision repair	map03410
		Nucleotide excision repair	map03420

Gene Ontology

GO term	Ontology	Name
GO:0006260	biological_process	DNA replication
GO:0003677	molecular_function	DNA binding
GO:0003887	molecular_function	DNA-directed DNA polymerase activity

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	3.195
	SRR3591706	second leaf	1.157
	SRR3591707	mature leaf	0.387
	SRR3591708	Shoot apex	8.081
	SRR3591709	Stem	2.029
	SRR3591710	White floral bud	1.053
	SRR3591711	White flower	0.894
	SRR3591712	Green floral bud	1.010
	SRR3591713	Yellow flower	0.967
SRP173429	SRR8316895	Juvenile bud stage	2.620
	SRR8316896	Juvenile bud stage	2.244
	SRR8316897	Juvenile bud stage	0.805
	SRR8316894	Third green stage	1.056
	SRR8316900	Third green stage	1.062
	SRR8316901	Third green stage	1.637
	SRR8316898	Complete white stage	0.645
	SRR8316899	Complete white stage	1.838
	SRR8316903	Complete white stage	0.619
	SRR8316902	Silver flowering stage	0.154
	SRR8316904	Silver flowering stage	0.358
	SRR8316905	Silver flowering stage	0.097
	SRR8316906	Gold flowering stage	0.210
	SRR8316907	Gold flowering stage	0.247
	SRR8316908	Gold flowering stage	0.562
SRP132670	SRR6706286	Control	1.494
	SRR6706287	Light intensity 50%	1.623
	SRR6706288	Light intensity 20%	1.647
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	2.399
	CNS0095593	Slightly white alabastrum(diploid) 2	0.784
	CNS0095594	Slightly white alabastrum(diploid) 3	1.177
	CNS0095595	Whole white alabastrum(diploid) 2	1.056
	CNS0095596	Whole white alabastrum(diploid) 3	0.873
	CNS0095597	Whole white alabastrum(diploid) 4	1.628
	CNS0095598	Silvery flower (diploied) 1	3.642
	CNS0095599	Silvery flower (diploied) 2	1.473
	CNS0095600	Silvery flower (diploied) 3	0.652
	CNS0095601	Golden flower (diploid) 1	0.778
	CNS0095602	Golden flower (diploid) 2	0.478
	CNS0095603	Golden flower (diploid) 3	0.350
	CNS0095604	Slightly white alabastrum(tetraploid) 1	1.756
	CNS0095605	Slightly white alabastrum(tetraploid) 2	1.113
	CNS0095606	Slightly white alabastrum(tetraploid) 3	1.880
	CNS0095607	Whole white alabastrum(tetraploid) 1	0.900
	CNS0095608	Whole white alabastrum(tetraploid) 2	0.105
	CNS0095609	Whole white alabastrum(tetraploid) 3	0.849
	CNS0095610	Silvery flower (tetraploid) 1	0.326
	CNS0095611	Silvery flower (tetraploid) 2	0.206
	CNS0095612	Silvery flower (tetraploid) 3	0.481
	CNS0095613	Golden flower (tetraploid) 1	0.033
	CNS0095614	Golden flower (tetraploid) 2	0.069
	CNS0095615	Golden flower (tetraploid) 3	0.223
CRA001975	CRR073297	Stem 1	2.986
	CRR073298	Stem 2	3.347
	CRR073299	Stem 3	2.285
	CRR073300	Leaf 1	1.626
	CRR073301	Leaf 2	1.186
	CRR073302	Leaf 3	0.979
	CRR073303	Juvenile bud 1	0.685
	CRR073304	Juvenile bud 2	0.289
	CRR073305	Juvenile bud 3	1.459
	CRR073306	Third green 1	0.058
	CRR073307	Third green 2	0.000
	CRR073308	Third green 3	0.014
	CRR073309	Second white 1	0.029
	CRR073310	Second white 2	0.000
	CRR073311	Second white 3	0.046
	CRR073312	Silver flowering 1	0.000
	CRR073313	Silver flowering 2	0.072
	CRR073314	Silver flowering 3	0.055
	CRR073315	Gold flowering 1	0.121
	CRR073316	Gold flowering 2	0.383
	CRR073317	Gold flowering 3	0.508
	CRR073318	Tawny withering 1	3.245
	CRR073319	Tawny withering 2	1.863
	CRR073320	Tawny withering 3	4.143