Gene detail

Detail information of GWHGAAZE018176

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	Q9MBB3.1RS3A_DAUCA	2.294E-168	RecName: Full=40S ribosomal protein S3a; AltName: Full=Protein cyc07 [Daucus carota]
Swissprot	tr\|Q9MBB3\|RS3A_DAUCA	1E-170	40S ribosomal protein S3a {ECO:0000255\|HAMAP-Rule:MF_03122}
trEMBL	tr\|A0A068TQY9\|A0A068TQY9_COFCA	6E-168	40S ribosomal protein S3a {ECO:0000256\|HAMAP-Rule:MF_03122}
TAIR10	AT4G34670.1	5E-115	Ribosomal protein S3Ae

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000005	gene	16149955	16152991	+
GWHAAZE00000005	mRNA	16149955	16152991	+
GWHAAZE00000005	exon	16149955	16149965	+
GWHAAZE00000005	exon	16150054	16150101	+
GWHAAZE00000005	exon	16150210	16150315	+
GWHAAZE00000005	exon	16151802	16151939	+
GWHAAZE00000005	exon	16152024	16152209	+
GWHAAZE00000005	exon	16152328	16152528	+
GWHAAZE00000005	exon	16152706	16152991	+
GWHAAZE00000005	CDS	16149955	16149965	+
GWHAAZE00000005	CDS	16150054	16150101	+
GWHAAZE00000005	CDS	16150210	16150315	+
GWHAAZE00000005	CDS	16151802	16151939	+
GWHAAZE00000005	CDS	16152024	16152209	+
GWHAAZE00000005	CDS	16152328	16152528	+
GWHAAZE00000005	CDS	16152706	16152786	+
GWHAAZE00000005	three_prime_UTR	16152787	16152991	+

Transcript Sequence
>GWHTAAZE018198 ATGGCTGTTGGGAAGAACAAGAGGATTTCCAAGGGAAAGAAGGGAGGAAAGAAGAAGGCTGCTGATCCGTTCGCTAAGAAGGATTGGTATGATATCAAGGCACCATCAGTCTTTGAGACAAGAAATGTCGGCAAAACCCTAGTCAGCAGGACTCAGGGTACAAAGATTGCTTCAGAAGGACTCAAGCATAGAGTGTTTGAGGTTAGTCTTGCTGATCTCCAGAAGGATGAGGATCAGGCATACAGGAAGATCCGTCTTAGAGCAGAGGACGTGCAAGGGAAGAACGTCCTCACAAATTTCTGGGGAATGGACTTCACAACGGACAAGGTGAGGTCCCTTGTTCGCAAGTGGCAGACATTGATTGAGGCTCATGTGGATGTGAAGACGACAGACAGCTTCACTCTTAGGATGTTCTGCATTGGATTCACAAAGAAGCGTGCAAACCAGCAGAAAAGGACCTGTTATGCCCAGTCTAGCCAGATCCGTCAGATTCGCCGCAAAATGGTCGAAATTATGAGGAACCAAGCAAGCTCCTGTGATCTTAAGGAATTGGTCGCTAAGTTCATCCCTGAGTCAATTGGGAGAGAGATTGAGAAGGCAACTTCAAGCATCTTCCCTCTGCAGAATGTGTTCATTCGTAAAGTCAAGATTTTGAAAGCACCCAAGTTTGATCTTGGCAAGTTAATGGAGGTCCATGGTGATTATTCGGATGATGTTGGTGTCAAAATGGAGAGGCCAGCGGAAGAAACAATGGATAGAGGCGGAAGCTGAAGTGGTTGGAGCTTGAGAGATAAAAGTTTATTTTATTTAAACCCAAGATTATGAGCTATTTTTTGTTTTTTACCAGATTGTGTTTTTTGTTGGAAGTTTATCTTGACAAAATTTTGCAATGTTAAGATTGGGATTACTTTGGTCCTTATATCATATTTCTGCATTGTTCTCGGTTTAATTTTATGAATTTGCCTTCTTCTGTTAT

Network for GWHGAAZE018176

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF01015.19	Ribosomal_S3Ae	16	221	5.60E-83

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K02984	RP-S3Ae, RPS3A	Ribosome	map03010

Gene Ontology

GO term	Ontology	Name
GO:0006412	biological_process	translation
GO:0005840	cellular_component	ribosome
GO:0003735	molecular_function	structural constituent of ribosome

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	267.159
	SRR3591706	second leaf	112.776
	SRR3591707	mature leaf	38.136
	SRR3591708	Shoot apex	317.632
	SRR3591709	Stem	113.192
	SRR3591710	White floral bud	104.754
	SRR3591711	White flower	131.581
	SRR3591712	Green floral bud	245.081
	SRR3591713	Yellow flower	97.198
SRP173429	SRR8316895	Juvenile bud stage	145.808
	SRR8316896	Juvenile bud stage	199.089
	SRR8316897	Juvenile bud stage	119.565
	SRR8316894	Third green stage	87.235
	SRR8316900	Third green stage	260.519
	SRR8316901	Third green stage	238.409
	SRR8316898	Complete white stage	35.467
	SRR8316899	Complete white stage	161.810
	SRR8316903	Complete white stage	56.042
	SRR8316902	Silver flowering stage	41.796
	SRR8316904	Silver flowering stage	45.137
	SRR8316905	Silver flowering stage	21.210
	SRR8316906	Gold flowering stage	60.107
	SRR8316907	Gold flowering stage	64.030
	SRR8316908	Gold flowering stage	85.210
SRP132670	SRR6706286	Control	153.523
	SRR6706287	Light intensity 50%	173.058
	SRR6706288	Light intensity 20%	193.037
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	197.398
	CNS0095593	Slightly white alabastrum(diploid) 2	232.997
	CNS0095594	Slightly white alabastrum(diploid) 3	194.478
	CNS0095595	Whole white alabastrum(diploid) 2	169.193
	CNS0095596	Whole white alabastrum(diploid) 3	209.638
	CNS0095597	Whole white alabastrum(diploid) 4	129.432
	CNS0095598	Silvery flower (diploied) 1	75.340
	CNS0095599	Silvery flower (diploied) 2	80.021
	CNS0095600	Silvery flower (diploied) 3	71.026
	CNS0095601	Golden flower (diploid) 1	52.287
	CNS0095602	Golden flower (diploid) 2	51.935
	CNS0095603	Golden flower (diploid) 3	57.289
	CNS0095604	Slightly white alabastrum(tetraploid) 1	212.301
	CNS0095605	Slightly white alabastrum(tetraploid) 2	184.732
	CNS0095606	Slightly white alabastrum(tetraploid) 3	266.786
	CNS0095607	Whole white alabastrum(tetraploid) 1	100.998
	CNS0095608	Whole white alabastrum(tetraploid) 2	81.743
	CNS0095609	Whole white alabastrum(tetraploid) 3	210.382
	CNS0095610	Silvery flower (tetraploid) 1	66.750
	CNS0095611	Silvery flower (tetraploid) 2	59.236
	CNS0095612	Silvery flower (tetraploid) 3	47.837
	CNS0095613	Golden flower (tetraploid) 1	40.446
	CNS0095614	Golden flower (tetraploid) 2	60.448
	CNS0095615	Golden flower (tetraploid) 3	31.134
CRA001975	CRR073297	Stem 1	264.704
	CRR073298	Stem 2	249.621
	CRR073299	Stem 3	330.543
	CRR073300	Leaf 1	250.988
	CRR073301	Leaf 2	287.990
	CRR073302	Leaf 3	379.928
	CRR073303	Juvenile bud 1	314.138
	CRR073304	Juvenile bud 2	210.550
	CRR073305	Juvenile bud 3	242.966
	CRR073306	Third green 1	48.866
	CRR073307	Third green 2	47.907
	CRR073308	Third green 3	61.278
	CRR073309	Second white 1	67.482
	CRR073310	Second white 2	44.349
	CRR073311	Second white 3	37.746
	CRR073312	Silver flowering 1	53.708
	CRR073313	Silver flowering 2	64.338
	CRR073314	Silver flowering 3	57.084
	CRR073315	Gold flowering 1	75.503
	CRR073316	Gold flowering 2	87.290
	CRR073317	Gold flowering 3	60.684
	CRR073318	Tawny withering 1	261.480
	CRR073319	Tawny withering 2	218.972
	CRR073320	Tawny withering 3	310.854