Gene detail

Detail information of GWHGAAZE018171

Functional Annotation

Database	Orthologs	Annotation
Nr	XP_009356011.1	PREDICTED: probable inactive receptor kinase At1g48480 [Pyrus x bretschneideri]
Swissprot	tr\|Q9LP77\|Y1848_ARATH	Probable inactive receptor kinase At1g48480 (Precursor)
trEMBL	tr\|F6GSP3\|F6GSP3_VITVI	Putative uncharacterized protein {ECO:0000313\|EMBL:CCB43298.1}
TAIR10	AT1G48480.1	receptor-like kinase 1

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000005	gene	16013683	16016296	-
GWHAAZE00000005	mRNA	16013683	16016296	-
GWHAAZE00000005	exon	16013683	16014296	-
GWHAAZE00000005	exon	16014961	16016296	-
GWHAAZE00000005	CDS	16014961	16016296	-
GWHAAZE00000005	CDS	16013683	16014296	-

Transcript Sequence
>GWHTAAZE018193 ATGTTGCTACTCCTGTTCTTCACTTTCCTTTTTACCTCTCTCCCCAGCGGAACCCCAGATCTGACCACCGACAGAGCCGCCCTTTTAGCACTCCGTTCAGCCGTCGGCGGCCGTACATTCCTCTGGAACACCGCCCAACAAACCCCCTGTCAGTGGGCTGGTGTCCAGTGCCACAACAACCGCGTCACCGCCCTCCGCCTCCCCGGCGTCTCTCTCTCCGGCCAACTCCCCTCCGGAACCGTCGGAAACCTCACCGACCTACAAACCCTCAGCCTTCGCTTCAACGCCCTCTCCGGGCCCCTCCCCTCAGATCTCTCCAATTGCAAACAACTCCGCAACCTCTACTTACAGGGAAACCGCTTCTCCGGCCCCTTGCCGGAGTTTTTATTTGGGGTTCAGCATCTTGTCCGTTTGAATCTTGCCGGAAATAACTTTTCCGGGAAGATCTCAACCGGGTTTAGTAATTTGACCAGGTTGAGAACGCTTTACCTCGAGAACAATCAACTTACTGGATCTCTTCCTGATCTTAAGCTTCCAAATTTAGTGCAATTCAATGTGTCTTTCAACCAATTGAATGGGTCTGTTCCGGCGAGTCTTAAGTCCATGCCGGTGGACTCATTTTTGGGGAATGTTCTGTGCGGTAAACCACTCAAATCCTGTCCCACTGACGCTGCCATTGCTGGGATCGGGGAAGTTGGCAATAACCATAACAACAACAACAAGAAAGGGCTCTCTGGTGGTGCCATTGCCGGTATTGTGATTGGATCTGTTTTCGGTCTTCTTTTAGTTCTACTACTTTTGTTCATTTTGTGCCGAAAGAAGACTAGTAAGAAGACTAGATCGGTTGATTCTTCAACAATGAAGAACTCGGAAATGGAGAATTTGGGGGAGAAGCCGCTAGCAGAGGCTGAGACTGGAGGTTTTGGTAGCAACCCTAATGGATATTCGGTGGCAGCTGCAGCTGCGGCGGCTATGACGGCTAACGGGAAGTCGGAGAATAGTGATGGTGGTGGTGGGGCTAAGAAGTTGTTGTTCTTTGGTAATGCGGCTAGGGTTTTTGATTTGGAGGATTTGTTGAGGGCTTCAGCTGAGGTTTTGGGGAAAGGGACATTTGGGACTGCTTATAAGGCTGTTTTGGAGGCTGGGATTGTGGTGGCTGTGAAGAGATTGAAGGATGTGACCATCACTGAGAGGGAATTTAGAGAGAAGATTGATTCTGTGGGAGCTATGGATCATGCCAATTTGGTCCCTCTTAGGGCTTACTATTATAGCAGAGAGGAGAAGCTTCTTGTCTATGACTATATGTCTATGGGGAGCTTATCTGCACTTTTGCATGGAAACAAAGGAGCTGGAAGGACTCCACTGAATTGGGAAATCAGATCCACCATTGCCCTCGGAACTGCCCGGGGTGTTGAATACCTACACTCTCAAGGTCCCAATATCTCCCATGGGAACATCAAATCTTCCAATATCCTCCTTACTAAATCCTACGAGGCCCGTGTCTCTGACTTCGGTTTAGCCCACCTTGTCGGACCCTCCTCCACCCCCAATCGAGTAGCTGGCTATCGTGCACCAGAGGTGACCGACCCTCGCAAAGTTTCCCAAAAGGCAGATGTTTATAGCTTCGGCGTATTGCTCCTAGAGCTTTTGACAGGCAAGGCACCCACCCATGCCCTTTTGAATGAGGAAGGGGTTGACCTCCCTAGGTGGGTCCAGTCGATTGTTCGTGAGGAGTGGACCTCCGAGGTTTTCGATCTTGAACTCCTCCGTTACCAAAATGTCGAAGAGGAAATGGTTCAGCTTTTGCAGCTTGCAATAGACTGTGCGGCTCAGTACCCGGACAAACGCCCTTCAATGTCTGAGGTCACTGTCCGTATTGAGGAGCTCTGTCGTTCTAGCGTTCGAGATTTTCAAGATCCACAACCTGATTTTGTCGACGAAACTGCTTAA

Network for GWHGAAZE018171

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF08263.13	LRRNT_2	23	57	1.50E-05
PF00069.26	Pkinase	363	622	1.10E-39

Protein Sequence

Gene family

Gene family	subfamily
Protein Kinases Family	RLK-Pelle_LRR-III

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0006468	biological_process	protein phosphorylation
GO:0005524	molecular_function	ATP binding
GO:0005515	molecular_function	protein binding
GO:0004672	molecular_function	protein kinase activity

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	73.692
	SRR3591706	second leaf	46.755
	SRR3591707	mature leaf	5.411
	SRR3591708	Shoot apex	116.326
	SRR3591709	Stem	27.973
	SRR3591710	White floral bud	16.937
	SRR3591711	White flower	9.122
	SRR3591712	Green floral bud	43.976
	SRR3591713	Yellow flower	0.661
SRP173429	SRR8316895	Juvenile bud stage	33.984
	SRR8316896	Juvenile bud stage	40.604
	SRR8316897	Juvenile bud stage	16.254
	SRR8316894	Third green stage	20.031
	SRR8316900	Third green stage	46.495
	SRR8316901	Third green stage	41.468
	SRR8316898	Complete white stage	2.852
	SRR8316899	Complete white stage	24.480
	SRR8316903	Complete white stage	7.951
	SRR8316902	Silver flowering stage	0.434
	SRR8316904	Silver flowering stage	0.581
	SRR8316905	Silver flowering stage	0.279
	SRR8316906	Gold flowering stage	0.201
	SRR8316907	Gold flowering stage	0.499
	SRR8316908	Gold flowering stage	0.793
SRP132670	SRR6706286	Control	37.091
	SRR6706287	Light intensity 50%	37.830
	SRR6706288	Light intensity 20%	42.034
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	32.746
	CNS0095593	Slightly white alabastrum(diploid) 2	38.100
	CNS0095594	Slightly white alabastrum(diploid) 3	25.971
	CNS0095595	Whole white alabastrum(diploid) 2	24.038
	CNS0095596	Whole white alabastrum(diploid) 3	25.287
	CNS0095597	Whole white alabastrum(diploid) 4	21.292
	CNS0095598	Silvery flower (diploied) 1	38.216
	CNS0095599	Silvery flower (diploied) 2	29.243
	CNS0095600	Silvery flower (diploied) 3	9.481
	CNS0095601	Golden flower (diploid) 1	23.645
	CNS0095602	Golden flower (diploid) 2	14.638
	CNS0095603	Golden flower (diploid) 3	13.752
	CNS0095604	Slightly white alabastrum(tetraploid) 1	45.693
	CNS0095605	Slightly white alabastrum(tetraploid) 2	37.567
	CNS0095606	Slightly white alabastrum(tetraploid) 3	101.737
	CNS0095607	Whole white alabastrum(tetraploid) 1	21.276
	CNS0095608	Whole white alabastrum(tetraploid) 2	13.464
	CNS0095609	Whole white alabastrum(tetraploid) 3	45.198
	CNS0095610	Silvery flower (tetraploid) 1	2.453
	CNS0095611	Silvery flower (tetraploid) 2	7.637
	CNS0095612	Silvery flower (tetraploid) 3	4.587
	CNS0095613	Golden flower (tetraploid) 1	0.512
	CNS0095614	Golden flower (tetraploid) 2	1.787
	CNS0095615	Golden flower (tetraploid) 3	0.663
CRA001975	CRR073297	Stem 1	88.240
	CRR073298	Stem 2	100.124
	CRR073299	Stem 3	133.090
	CRR073300	Leaf 1	100.515
	CRR073301	Leaf 2	89.647
	CRR073302	Leaf 3	93.263
	CRR073303	Juvenile bud 1	58.529
	CRR073304	Juvenile bud 2	60.141
	CRR073305	Juvenile bud 3	79.415
	CRR073306	Third green 1	4.377
	CRR073307	Third green 2	4.686
	CRR073308	Third green 3	5.898
	CRR073309	Second white 1	0.204
	CRR073310	Second white 2	0.195
	CRR073311	Second white 3	0.434
	CRR073312	Silver flowering 1	0.023
	CRR073313	Silver flowering 2	0.319
	CRR073314	Silver flowering 3	0.216
	CRR073315	Gold flowering 1	4.730
	CRR073316	Gold flowering 2	6.845
	CRR073317	Gold flowering 3	8.221
	CRR073318	Tawny withering 1	145.144
	CRR073319	Tawny withering 2	71.104
	CRR073320	Tawny withering 3	173.104