Detail information of GWHGAAZE018162


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrXP_002530478.10conserved hypothetical protein [Ricinus communis]
Swissprottr|Q9LM25|HRD3A_ARATH0ERAD-associated E3 ubiquitin-protein ligase component HRD3A {ECO:0000305} (Precursor)
trEMBLtr|B9SWV9|B9SWV9_RICCO0Putative uncharacterized protein {ECO:0000313|EMBL:EEF31901.1}
TAIR10AT1G18260.10HCP-like superfamily protein

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000005gene1587216715875496-
GWHAAZE00000005mRNA1587216715875496-
GWHAAZE00000005exon1587216715872391-
GWHAAZE00000005exon1587269415872936-
GWHAAZE00000005exon1587301915873342-
GWHAAZE00000005exon1587367815873893-
GWHAAZE00000005exon1587403815874489-
GWHAAZE00000005exon1587486915875496-
GWHAAZE00000005CDS1587486915875496-
GWHAAZE00000005CDS1587403815874489-
GWHAAZE00000005CDS1587367815873893-
GWHAAZE00000005CDS1587301915873342-
GWHAAZE00000005CDS1587269415872936-
GWHAAZE00000005CDS1587216715872391-
Transcript Sequence

Network for GWHGAAZE018162

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF08238.13Sel113917416
PF08238.13Sel12642992.60E-07
PF08238.13Sel13023344.70E-06
PF08238.13Sel13383721.20E-06
PF08238.13Sel13774080.00014
PF08238.13Sel141444413
PF08238.13Sel145947741
PF08238.13Sel15275501.3
PF08238.13Sel15625937.70E-05
Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
K14026SEL1, SEL1L Protein processing in endoplasmic reticulum map04141

Gene Ontology

GO term OntologyName
GO:0005515molecular_functionprotein binding

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf10.662
SRR3591706second leaf7.365
SRR3591707mature leaf4.317
SRR3591708Shoot apex9.999
SRR3591709Stem8.662
SRR3591710White floral bud7.047
SRR3591711White flower6.524
SRR3591712Green floral bud9.233
SRR3591713Yellow flower5.766
SRP173429 SRR8316895Juvenile bud stage 3.088
SRR8316896Juvenile bud stage 6.092
SRR8316897Juvenile bud stage 2.143
SRR8316894Third green stage 3.309
SRR8316900Third green stage 9.092
SRR8316901Third green stage 8.106
SRR8316898Complete white stage 2.201
SRR8316899Complete white stage 6.989
SRR8316903Complete white stage 4.837
SRR8316902Silver flowering stage1.851
SRR8316904Silver flowering stage2.678
SRR8316905Silver flowering stage1.070
SRR8316906Gold flowering stage 4.005
SRR8316907Gold flowering stage 4.925
SRR8316908Gold flowering stage 4.806
SRP132670SRR6706286Control10.311
SRR6706287Light intensity 50%11.380
SRR6706288Light intensity 20%12.665
CNP0000432CNS0095592Slightly white alabastrum(diploid) 16.628
CNS0095593Slightly white alabastrum(diploid) 23.954
CNS0095594Slightly white alabastrum(diploid) 34.017
CNS0095595Whole white alabastrum(diploid) 25.032
CNS0095596Whole white alabastrum(diploid) 36.518
CNS0095597Whole white alabastrum(diploid) 44.910
CNS0095598Silvery flower (diploied) 15.563
CNS0095599Silvery flower (diploied) 22.408
CNS0095600Silvery flower (diploied) 37.151
CNS0095601Golden flower (diploid) 13.893
CNS0095602Golden flower (diploid) 28.066
CNS0095603Golden flower (diploid) 37.052
CNS0095604Slightly white alabastrum(tetraploid) 17.030
CNS0095605Slightly white alabastrum(tetraploid) 26.037
CNS0095606Slightly white alabastrum(tetraploid) 311.889
CNS0095607Whole white alabastrum(tetraploid) 15.782
CNS0095608Whole white alabastrum(tetraploid) 24.133
CNS0095609Whole white alabastrum(tetraploid) 37.868
CNS0095610Silvery flower (tetraploid) 15.752
CNS0095611Silvery flower (tetraploid) 25.432
CNS0095612Silvery flower (tetraploid) 34.724
CNS0095613Golden flower (tetraploid) 13.320
CNS0095614Golden flower (tetraploid) 26.560
CNS0095615Golden flower (tetraploid) 34.173
CRA001975CRR073297Stem 110.667
CRR073298Stem 211.452
CRR073299Stem 310.185
CRR073300Leaf 111.206
CRR073301Leaf 29.684
CRR073302Leaf 36.724
CRR073303Juvenile bud 18.084
CRR073304Juvenile bud 25.384
CRR073305Juvenile bud 310.343
CRR073306Third green 11.998
CRR073307Third green 21.551
CRR073308Third green 32.395
CRR073309Second white 12.648
CRR073310Second white 21.564
CRR073311Second white 31.778
CRR073312Silver flowering 11.950
CRR073313Silver flowering 22.154
CRR073314Silver flowering 31.583
CRR073315Gold flowering 11.013
CRR073316Gold flowering 22.273
CRR073317Gold flowering 32.156
CRR073318Tawny withering 18.184
CRR073319Tawny withering 24.207
CRR073320Tawny withering 37.207