Gene detail

Detail information of GWHGAAZE018154

Functional Annotation

Database	Orthologs	Annotation
Nr	XP_008240152.1	PREDICTED: phosphoethanolamine N-methyltransferase 1 isoform X1 [Prunus mume]
Swissprot	tr\|Q9FR44\|PEAM1_ARATH	Phosphoethanolamine N-methyltransferase 1
trEMBL	tr\|M5WCW4\|M5WCW4_PRUPE	Uncharacterized protein {ECO:0000313\|EMBL:EMJ11141.1}
TAIR10	AT1G48600.2	S-adenosyl-L-methionine-dependent methyltransferases superfamily protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000005	gene	15750753	15755756	-
GWHAAZE00000005	mRNA	15750753	15755756	-
GWHAAZE00000005	exon	15755741	15755756	-
GWHAAZE00000005	exon	15755508	15755623	-
GWHAAZE00000005	exon	15754358	15754495	-
GWHAAZE00000005	exon	15754094	15754231	-
GWHAAZE00000005	exon	15753659	15753802	-
GWHAAZE00000005	exon	15753383	15753493	-
GWHAAZE00000005	exon	15753146	15753287	-
GWHAAZE00000005	exon	15752638	15752918	-
GWHAAZE00000005	exon	15751733	15751894	-
GWHAAZE00000005	exon	15751425	15751478	-
GWHAAZE00000005	exon	15751250	15751324	-
GWHAAZE00000005	exon	15750753	15751135	-
GWHAAZE00000005	CDS	15755741	15755756	-
GWHAAZE00000005	CDS	15755508	15755623	-
GWHAAZE00000005	CDS	15754358	15754495	-
GWHAAZE00000005	CDS	15754094	15754231	-
GWHAAZE00000005	CDS	15753659	15753802	-
GWHAAZE00000005	CDS	15753383	15753493	-
GWHAAZE00000005	CDS	15753146	15753287	-
GWHAAZE00000005	CDS	15752638	15752918	-
GWHAAZE00000005	CDS	15751733	15751894	-
GWHAAZE00000005	CDS	15751425	15751478	-
GWHAAZE00000005	CDS	15751250	15751324	-
GWHAAZE00000005	CDS	15751040	15751135	-
GWHAAZE00000005	three_prime_UTR	15750753	15751039	-

Transcript Sequence
>GWHTAAZE018176 ATGGCTACTGCTCAAGATCAAGAACGTGAGATCCAGAAGAATTACTGGGTCGAGCACTCTGGTGACCTAAGTGTTGAGGCCATGATGCTCGATTCTAAAGCTGCTGATCTCGACAAGGAAGAGAGACCTGAGATACTCTCTCTTCTCCCACCATATGAAGGGAAATCGATTCTGGAACTAGGAGCTGGTATAGGCCGTTTCACTGGTGAATTGGCTCAAAAGGCGGGTCAGGTTATAGCTTTGGACTTCATTGACAGTGTGATAAAGAAGAATGAAAGCATAAATGGGCATCACAAAAATGTCAAGTTTATGTGTGCTGATGTGACATCTCCTGACCTCAATATATCAGCAGAATCAACAGACTTGATTTTCTCAAACTGGCTACTGATGTATCTCTCTGATAAAGAGGTTGAGAATCTTGTAGAAAGATTGGTCAAATGGCTGAAGGTTGGTGGGTATATTTTCTTCAGAGAATCATGTTTCCATCAATCTGGAGACCATAAGCGAAAGAACAACCCAACCCACTATCGGGAACCCAGATTTTATACAAAGATCTTTAAAGAATGTCATACACAAGATGATTCCAGCAATTCCTATGAACTCTCTTTTGTTGGCTGCAAATGTATTGGAGCTTATGTGAGGAACAAGAAAAATCAAAATCAGATTTGCTGGATTTGGCAGAAAGTCAAGTCAGAGGATGATAAAGGTTTCCAGCAATTCTTGGATAATGTCCAGTACAAGTGTAGTGGCATCTTGCGCTATGAACGTATCTTTGGACATGGTTATGTGAGCACAGGAGGAATTGAGACAACAAAAGAGTTTGTTGCCAAACTTGATCTTAAGCCAGGCCAGAAAGTACTAGATGTGGGGTGTGGCATTGGTGGAGGTGACTTCTACATGGCTGAGAACTTTGATGTAGATGTTGTTGGGATTGATCTCTCCATAAATATGATATCTTTTGCTCTAGAACGTGCAATCGGCCTCAAGTGTTCGGCTGAATTTGAGGTGGCTGATTGCACCAAGAAAACATACCCAGACAGCACATTTGATGTCATCTACAGCCGTGACACCATTCTTCACATTCAAGATAAACCTGCACTATTTAAATCCTTCTACAAGTGGTTGAAGCCAGGAGGCAAAGTCCTCATCAGTGATTACTGCCGAAGAGCTGGAACCCCATCGCCAGAATTTGCGGAGTACATTAAGCAAAGAGGATACGATCTCCACGATGTACAAGCATACGGACAGATGCTTAAAGATGCTGGATTTGACCAAGTGAGAGCTGAGGATAGAACTGATCAGTTCATGAAAGTGCTGCAAAAGGAATTAAACAAGGTCGAGAAGGAAAAGGAAGAATTCATTCAAGACTTCTCCGAGGAAGACTACAATGATATAGTTGGAGGGTGGAAGGCAAAGCTGGTAAGGAGTTCATCTGGGGAGCAGAGGTGGGGACTGTTCATTGCCCAGAAGTGATACTCTTCTTCCTCCTATGCTGTCTCTGTCTACCTTTTTTTCGTCGAAGAATAAAACCCAAATGCAATTGTTGTGTGTGCTTTTGGTTGTGTGTGTTTTTTTGGCAGGGACTTTTGCCTATGACCATATAAATTAAACAGTTATCGCCTGTAGAATCCGTTAGGATTTACTCTTTATGAAGTTGTGGTTACTTTTCTATGCGGATGGACAGGGCCAGTTATCTCAATTTTAATCATGTTAGATGTGGGAGTGGAATGGAAATTTGGTGGTTGGGGTGTGTGCTTCAA

Network for GWHGAAZE018154

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF08241.13	Methyltransf_11	58	156	4.10E-14
PF13489.7	Methyltransf_23	273	426	4.40E-20

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K05929	E2.1.1.103, NMT	Glycerophospholipid metabolism	map00564

Gene Ontology

GO term	Ontology	Name
GO:0006656	biological_process	phosphatidylcholine biosynthetic process
GO:0000234	molecular_function	phosphoethanolamine N-methyltransferase activity
GO:0008168	molecular_function	methyltransferase activity

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	200.905
	SRR3591706	second leaf	147.810
	SRR3591707	mature leaf	12.111
	SRR3591708	Shoot apex	260.673
	SRR3591709	Stem	23.397
	SRR3591710	White floral bud	269.671
	SRR3591711	White flower	52.019
	SRR3591712	Green floral bud	912.212
	SRR3591713	Yellow flower	14.134
SRP173429	SRR8316895	Juvenile bud stage	202.487
	SRR8316896	Juvenile bud stage	333.959
	SRR8316897	Juvenile bud stage	152.797
	SRR8316894	Third green stage	196.111
	SRR8316900	Third green stage	508.494
	SRR8316901	Third green stage	482.488
	SRR8316898	Complete white stage	46.188
	SRR8316899	Complete white stage	251.324
	SRR8316903	Complete white stage	65.281
	SRR8316902	Silver flowering stage	10.955
	SRR8316904	Silver flowering stage	15.081
	SRR8316905	Silver flowering stage	4.106
	SRR8316906	Gold flowering stage	10.472
	SRR8316907	Gold flowering stage	7.846
	SRR8316908	Gold flowering stage	13.834
SRP132670	SRR6706286	Control	152.963
	SRR6706287	Light intensity 50%	183.267
	SRR6706288	Light intensity 20%	211.009
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	409.467
	CNS0095593	Slightly white alabastrum(diploid) 2	735.626
	CNS0095594	Slightly white alabastrum(diploid) 3	319.016
	CNS0095595	Whole white alabastrum(diploid) 2	444.269
	CNS0095596	Whole white alabastrum(diploid) 3	469.877
	CNS0095597	Whole white alabastrum(diploid) 4	351.723
	CNS0095598	Silvery flower (diploied) 1	109.907
	CNS0095599	Silvery flower (diploied) 2	168.496
	CNS0095600	Silvery flower (diploied) 3	54.566
	CNS0095601	Golden flower (diploid) 1	33.626
	CNS0095602	Golden flower (diploid) 2	17.037
	CNS0095603	Golden flower (diploid) 3	15.885
	CNS0095604	Slightly white alabastrum(tetraploid) 1	761.684
	CNS0095605	Slightly white alabastrum(tetraploid) 2	646.005
	CNS0095606	Slightly white alabastrum(tetraploid) 3	1413.968
	CNS0095607	Whole white alabastrum(tetraploid) 1	327.261
	CNS0095608	Whole white alabastrum(tetraploid) 2	350.093
	CNS0095609	Whole white alabastrum(tetraploid) 3	721.059
	CNS0095610	Silvery flower (tetraploid) 1	19.359
	CNS0095611	Silvery flower (tetraploid) 2	27.887
	CNS0095612	Silvery flower (tetraploid) 3	29.687
	CNS0095613	Golden flower (tetraploid) 1	6.325
	CNS0095614	Golden flower (tetraploid) 2	7.291
	CNS0095615	Golden flower (tetraploid) 3	7.724
CRA001975	CRR073297	Stem 1	267.872
	CRR073298	Stem 2	286.813
	CRR073299	Stem 3	198.075
	CRR073300	Leaf 1	238.792
	CRR073301	Leaf 2	259.002
	CRR073302	Leaf 3	214.440
	CRR073303	Juvenile bud 1	364.473
	CRR073304	Juvenile bud 2	252.766
	CRR073305	Juvenile bud 3	137.837
	CRR073306	Third green 1	79.952
	CRR073307	Third green 2	45.649
	CRR073308	Third green 3	50.311
	CRR073309	Second white 1	7.952
	CRR073310	Second white 2	4.667
	CRR073311	Second white 3	5.562
	CRR073312	Silver flowering 1	12.062
	CRR073313	Silver flowering 2	15.370
	CRR073314	Silver flowering 3	5.547
	CRR073315	Gold flowering 1	13.814
	CRR073316	Gold flowering 2	9.480
	CRR073317	Gold flowering 3	9.541
	CRR073318	Tawny withering 1	17.150
	CRR073319	Tawny withering 2	14.677
	CRR073320	Tawny withering 3	16.812