Gene detail

Detail information of GWHGAAZE018143

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_010663672.1	3.8804E-113	PREDICTED: serine/threonine-protein kinase EDR1 isoform X4 [Vitis vinifera]
Swissprot	tr\|Q9FPR3\|EDR1_ARATH	3E-53	Serine/threonine-protein kinase EDR1
trEMBL	tr\|Q0WM41\|Q0WM41_ARATH	6E-67	Putative uncharacterized protein At1g73660 {ECO:0000313\|EMBL:BAF01815.1} (Fragment)
TAIR10	AT1G73660.1	1E-49	protein tyrosine kinase family protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000005	gene	15664802	15672282	+
GWHAAZE00000005	mRNA	15664802	15672282	+
GWHAAZE00000005	exon	15664802	15665119	+
GWHAAZE00000005	exon	15667227	15667295	+
GWHAAZE00000005	exon	15667955	15668055	+
GWHAAZE00000005	exon	15669310	15669388	+
GWHAAZE00000005	exon	15669479	15669577	+
GWHAAZE00000005	exon	15670181	15670330	+
GWHAAZE00000005	exon	15670874	15670959	+
GWHAAZE00000005	exon	15671881	15671967	+
GWHAAZE00000005	exon	15672102	15672282	+
GWHAAZE00000005	CDS	15664802	15665119	+
GWHAAZE00000005	CDS	15667227	15667295	+
GWHAAZE00000005	CDS	15667955	15668055	+
GWHAAZE00000005	CDS	15669310	15669388	+
GWHAAZE00000005	CDS	15669479	15669577	+
GWHAAZE00000005	CDS	15670181	15670330	+
GWHAAZE00000005	CDS	15670874	15670959	+
GWHAAZE00000005	CDS	15671881	15671967	+
GWHAAZE00000005	CDS	15672102	15672282	+

Transcript Sequence
>GWHTAAZE018165 ATGAAGGTAAAAGATGTCTCAAGATACATGATTGATGCTGCCAAAGAAAATCCACAGTTAGCTCAGAAACTTCATGATGTTTTACTCGAAAGTGGTGTTGTTGCTCCTCCTAATTTGTTCACTGAAATCTATAAAGAGCAGTCGAATATAGAAACGGCAGAGGCCAAGTCCATGACTGAATACACCCAAAAGACAAAGGGTCATCAAGCTGATCTTAGTCGAGCTCGGTTTTTGCCTCCTCTGCCTTACCGTGGTTTACATTCTAAAGTAATAACTCATGGTCAACCGGAATATCATCAAGATTTAGAGGAAGTAAATGAAGTTGCTGTAAAGAAGTTTCTAGACCAAGATTTAACTGGTGAATCCCTTGAGGAGTTCAAGAGTGAGGTCCGGATCATGAAAAGAGTCAGGCATCCCAACGTTGTTCTCTTCATGGGGGCTATCACCCGTGCTCCAAATCTTTCAATTGTTACAGAATTTCTTCCTAGAGGTAGTTTGTATAGGTTACTTCACCGGCCCAACAATCAATTAGATGTACGAAGGCGTTTAAGGATGGCCCTCGATGCAGCTCGTGGGATGAATTATTTGCACAAATGCTCACCTGTAATAGTTCATCGAGATTTAAAGTCCCCAAACCTTCTTGTTGATAAGAATTGGGTTGTGAAGGGAAAACTTGTAGTTGGGTTGATGTCTTGGTGGCCTAGTTTCTTTTGCCTTGTCTTTTTGAATCTGATGTTCGGTCCTTTTGAATATAATGCTCAAAACATGAAAATTGACATTCCTGTTATTGGGGCTTCATCTGTGAATATATCCCAAGAAATTGCTCAAGTTGCAATATCATTTCATCTCATTGCAATTTACTACAGTATGACAAGTAGAAACTTTGATGGAGTAGGAACTCTCTCTGATGACGCTCTGCTGTTATATACCCTTCCCCAGGCGGAGTGGATGGCTCCTGAGGTGTTGAGGAACGAGCCTTCAGATGAAAAGTGTGATGTGTATAGCTTTGGTGTAATATTATGGGAGCTATGTACGATGCAGCAGCCATGGGGCGGAATGAACCCAATGCAAGTTGTTGGTGCCGTAGGATTTCAGCACCGTCGCCTTGATATTCCAGATGACATTGATCCTGTCGTTGGTGATATCATCCGCCAATGCTGGCAAACGTGA

Network for GWHGAAZE018143

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF07714.18	PK_Tyr_Ser-Thr	100	222	1.00E-27
PF07714.18	PK_Tyr_Ser-Thr	314	388	2.00E-16

Protein Sequence

Gene family

Gene family	subfamily
Protein Kinases Family	TKL_CTR1-DRK-1

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0006468	biological_process	protein phosphorylation
GO:0004672	molecular_function	protein kinase activity
GO:0005524	molecular_function	ATP binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	6.819
	SRR3591706	second leaf	4.760
	SRR3591707	mature leaf	5.033
	SRR3591708	Shoot apex	7.210
	SRR3591709	Stem	9.422
	SRR3591710	White floral bud	6.304
	SRR3591711	White flower	7.896
	SRR3591712	Green floral bud	6.622
	SRR3591713	Yellow flower	6.855
SRP173429	SRR8316895	Juvenile bud stage	5.284
	SRR8316896	Juvenile bud stage	7.359
	SRR8316897	Juvenile bud stage	3.098
	SRR8316894	Third green stage	3.645
	SRR8316900	Third green stage	8.210
	SRR8316901	Third green stage	8.627
	SRR8316898	Complete white stage	3.387
	SRR8316899	Complete white stage	11.150
	SRR8316903	Complete white stage	5.849
	SRR8316902	Silver flowering stage	3.112
	SRR8316904	Silver flowering stage	5.258
	SRR8316905	Silver flowering stage	2.696
	SRR8316906	Gold flowering stage	11.500
	SRR8316907	Gold flowering stage	9.911
	SRR8316908	Gold flowering stage	9.449
SRP132670	SRR6706286	Control	7.541
	SRR6706287	Light intensity 50%	6.157
	SRR6706288	Light intensity 20%	6.171
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	9.602
	CNS0095593	Slightly white alabastrum(diploid) 2	8.568
	CNS0095594	Slightly white alabastrum(diploid) 3	6.410
	CNS0095595	Whole white alabastrum(diploid) 2	6.249
	CNS0095596	Whole white alabastrum(diploid) 3	7.034
	CNS0095597	Whole white alabastrum(diploid) 4	5.816
	CNS0095598	Silvery flower (diploied) 1	7.503
	CNS0095599	Silvery flower (diploied) 2	8.665
	CNS0095600	Silvery flower (diploied) 3	8.599
	CNS0095601	Golden flower (diploid) 1	6.816
	CNS0095602	Golden flower (diploid) 2	8.143
	CNS0095603	Golden flower (diploid) 3	9.012
	CNS0095604	Slightly white alabastrum(tetraploid) 1	5.464
	CNS0095605	Slightly white alabastrum(tetraploid) 2	4.840
	CNS0095606	Slightly white alabastrum(tetraploid) 3	10.623
	CNS0095607	Whole white alabastrum(tetraploid) 1	4.118
	CNS0095608	Whole white alabastrum(tetraploid) 2	2.538
	CNS0095609	Whole white alabastrum(tetraploid) 3	4.987
	CNS0095610	Silvery flower (tetraploid) 1	8.849
	CNS0095611	Silvery flower (tetraploid) 2	10.012
	CNS0095612	Silvery flower (tetraploid) 3	13.324
	CNS0095613	Golden flower (tetraploid) 1	7.461
	CNS0095614	Golden flower (tetraploid) 2	9.426
	CNS0095615	Golden flower (tetraploid) 3	11.922
CRA001975	CRR073297	Stem 1	9.721
	CRR073298	Stem 2	10.884
	CRR073299	Stem 3	6.031
	CRR073300	Leaf 1	10.009
	CRR073301	Leaf 2	9.396
	CRR073302	Leaf 3	5.613
	CRR073303	Juvenile bud 1	7.676
	CRR073304	Juvenile bud 2	5.845
	CRR073305	Juvenile bud 3	10.434
	CRR073306	Third green 1	6.379
	CRR073307	Third green 2	5.169
	CRR073308	Third green 3	5.494
	CRR073309	Second white 1	5.769
	CRR073310	Second white 2	8.223
	CRR073311	Second white 3	8.164
	CRR073312	Silver flowering 1	8.490
	CRR073313	Silver flowering 2	4.552
	CRR073314	Silver flowering 3	5.098
	CRR073315	Gold flowering 1	4.037
	CRR073316	Gold flowering 2	6.251
	CRR073317	Gold flowering 3	1.470
	CRR073318	Tawny withering 1	12.878
	CRR073319	Tawny withering 2	10.151
	CRR073320	Tawny withering 3	11.395