Gene detail

Detail information of GWHGAAZE018125

Functional Annotation

Database	Orthologs	Annotation
Nr	NP_001234620.1	beta-mannosidase enzyme precursor [Solanum lycopersicum]
Swissprot	tr\|Q9LV33\|BGL44_ARATH	Beta-glucosidase 44 (Precursor)
trEMBL	tr\|K4BM57\|K4BM57_SOLLC	Uncharacterized protein {ECO:0000313\|EnsemblPlants:Solyc03g119080.2.1}
TAIR10	AT3G18080.1	B-S glucosidase 44

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000005	gene	15480251	15484147	+
GWHAAZE00000005	mRNA	15480251	15484147	+
GWHAAZE00000005	exon	15480251	15480491	+
GWHAAZE00000005	exon	15480999	15481057	+
GWHAAZE00000005	exon	15481190	15481265	+
GWHAAZE00000005	exon	15481771	15481842	+
GWHAAZE00000005	exon	15482246	15482333	+
GWHAAZE00000005	exon	15482440	15482692	+
GWHAAZE00000005	exon	15482775	15482890	+
GWHAAZE00000005	exon	15483254	15483312	+
GWHAAZE00000005	exon	15483394	15483425	+
GWHAAZE00000005	exon	15483688	15483790	+
GWHAAZE00000005	exon	15483870	15484147	+
GWHAAZE00000005	CDS	15480251	15480491	+
GWHAAZE00000005	CDS	15480999	15481057	+
GWHAAZE00000005	CDS	15481190	15481265	+
GWHAAZE00000005	CDS	15481771	15481842	+
GWHAAZE00000005	CDS	15482246	15482333	+
GWHAAZE00000005	CDS	15482440	15482692	+
GWHAAZE00000005	CDS	15482775	15482890	+
GWHAAZE00000005	CDS	15483254	15483312	+
GWHAAZE00000005	CDS	15483394	15483425	+
GWHAAZE00000005	CDS	15483688	15483790	+
GWHAAZE00000005	CDS	15483870	15484147	+

Transcript Sequence
>GWHTAAZE018147 ATGGCTACTTCATTAATGCTGTTTTGGCTGTTTACTTCTGTGACTGTAATTATTATTCAATGTGTCGCCGGAGCAACCGAGTCCCCGGAGACAATCAGGTTGGACACCGGCGGTTTGAGTAGAGAGAGCTTCCCGGAGGGGTTCGTGTTCGGAACGGCAACGTCGGCGTACCAAGTGGAAGGAATGGCCGACAAGGACGGTCGAGGTCCTAGTATCTGGGATCTCTTCATTAAATTTCCTGGACGCGAGCCAAATAATGCTACTGGCGAAGTTACAGTCGACCAATATCACCGTTACAAAGAAGACATTGATCTCATGGCAAAGCTGAACTTCGATGCCTACCGTTTCTCAATCTCTTGGTCCAGGATATTCCCAAATGGAAGTGGGAAAGTAAATTGGAAGGGAGTTGCTTATTACAATAGGCTGATCAACTACATGCTCAAAAAAGGTATTACCCCCTATGCTAATCTTAATCACTACGATCTTCCTCTAGCACTTCAAGAGAGGTGCAATGGATGGTTGAGCCGTGATGTAGTGAAAGACTTTGCAGATTATGCAGAGTTCTGTTTCAAGACATTTGGAGACAGAGTAAAGAATTGGATGACATTTAATGAACCTAGATGTATAGCTGCACTTGGTTATGACAATGGTTACTTTGCACCCGGAAGGTGCTCTAAAGCATATGGAAATTGTACAGCAGGAGATTCTGCAACCGAGCCTTACATTGTGGCCCATAATCTCATCTTATGTCATTCATCTGCAGTTCAAAGATACCGTGAGAATTACCTAGAAAAACAGAAGGGAAGGATTGGAATTCTGTTGGATTTTGTTTGGTATGAACCTCTTACAAGGTCAAAAGCTGACAATTACGCTGCTCAAAGAGCACGGGACTTTCATGTTGGATGGATTGGAATGTTGGATTTGCTTGTAAGATACTTTACTGCTTCCCCTTTAAACCTGATAGATGACCGTAAAGGAGTCCCAATCGGTCCAAAGGCATACTCTTATTGGCTCTACAATGTTCCATGGGGTCTGTACAAAGCTGTGACTTACATTAAAGAACATTACAGAAACCCTACTGTGATTTTGGCTGAGAATGGCATGGACGATCCGGGTAATATCACGCTTCCCAAGGGTTTGCATGACACAACAAGGATCAATTACTTCAAGGGTTATTTGGCTGAGCTAAAGAAGACTGTGGACGAGGGAGCAAATGTGATTGGCTACTTTGCATGGTCTTTGCTTGACAACTTTGAATGGAGATTAGGCTACACTTCAAGGTTTGGCATCGTTTATGTGGATTTCAAAACCCTTAAGAGGTACCCAAAGATGTCGGCCTACTGGTTCAAGAAATTACTTCATCGAAACAAGAATTAA

Network for GWHGAAZE018125

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00232.19	Glyco_hydro_1	41	304	4.80E-98
PF00232.19	Glyco_hydro_1	328	457	8.50E-40

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K05350	bglB	Metabolic pathways	map01100
		Biosynthesis of secondary metabolites	map01110
		Starch and sucrose metabolism	map00500
		Cyanoamino acid metabolism	map00460
		Phenylpropanoid biosynthesis	map00940

Gene Ontology

GO term	Ontology	Name
GO:0005975	biological_process	carbohydrate metabolic process
GO:0004553	molecular_function	hydrolase activity, hydrolyzing O-glycosyl compounds

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	26.044
	SRR3591706	second leaf	56.754
	SRR3591707	mature leaf	2.909
	SRR3591708	Shoot apex	90.717
	SRR3591709	Stem	1.627
	SRR3591710	White floral bud	7.846
	SRR3591711	White flower	3.546
	SRR3591712	Green floral bud	11.230
	SRR3591713	Yellow flower	0.000
SRP173429	SRR8316895	Juvenile bud stage	23.152
	SRR8316896	Juvenile bud stage	15.654
	SRR8316897	Juvenile bud stage	13.316
	SRR8316894	Third green stage	10.218
	SRR8316900	Third green stage	19.118
	SRR8316901	Third green stage	13.428
	SRR8316898	Complete white stage	0.084
	SRR8316899	Complete white stage	7.265
	SRR8316903	Complete white stage	2.916
	SRR8316902	Silver flowering stage	0.021
	SRR8316904	Silver flowering stage	0.183
	SRR8316905	Silver flowering stage	0.112
	SRR8316906	Gold flowering stage	0.339
	SRR8316907	Gold flowering stage	0.288
	SRR8316908	Gold flowering stage	0.057
SRP132670	SRR6706286	Control	7.146
	SRR6706287	Light intensity 50%	7.440
	SRR6706288	Light intensity 20%	8.100
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	21.363
	CNS0095593	Slightly white alabastrum(diploid) 2	17.621
	CNS0095594	Slightly white alabastrum(diploid) 3	13.689
	CNS0095595	Whole white alabastrum(diploid) 2	13.381
	CNS0095596	Whole white alabastrum(diploid) 3	10.981
	CNS0095597	Whole white alabastrum(diploid) 4	8.532
	CNS0095598	Silvery flower (diploied) 1	29.127
	CNS0095599	Silvery flower (diploied) 2	26.358
	CNS0095600	Silvery flower (diploied) 3	6.347
	CNS0095601	Golden flower (diploid) 1	20.504
	CNS0095602	Golden flower (diploid) 2	10.434
	CNS0095603	Golden flower (diploid) 3	8.776
	CNS0095604	Slightly white alabastrum(tetraploid) 1	20.582
	CNS0095605	Slightly white alabastrum(tetraploid) 2	20.200
	CNS0095606	Slightly white alabastrum(tetraploid) 3	28.664
	CNS0095607	Whole white alabastrum(tetraploid) 1	9.545
	CNS0095608	Whole white alabastrum(tetraploid) 2	5.004
	CNS0095609	Whole white alabastrum(tetraploid) 3	14.786
	CNS0095610	Silvery flower (tetraploid) 1	0.000
	CNS0095611	Silvery flower (tetraploid) 2	2.131
	CNS0095612	Silvery flower (tetraploid) 3	0.784
	CNS0095613	Golden flower (tetraploid) 1	0.000
	CNS0095614	Golden flower (tetraploid) 2	0.028
	CNS0095615	Golden flower (tetraploid) 3	0.000
CRA001975	CRR073297	Stem 1	40.523
	CRR073298	Stem 2	36.626
	CRR073299	Stem 3	34.217
	CRR073300	Leaf 1	11.606
	CRR073301	Leaf 2	12.422
	CRR073302	Leaf 3	11.311
	CRR073303	Juvenile bud 1	2.515
	CRR073304	Juvenile bud 2	0.983
	CRR073305	Juvenile bud 3	2.245
	CRR073306	Third green 1	0.051
	CRR073307	Third green 2	0.079
	CRR073308	Third green 3	0.108
	CRR073309	Second white 1	0.058
	CRR073310	Second white 2	0.000
	CRR073311	Second white 3	0.095
	CRR073312	Silver flowering 1	0.279
	CRR073313	Silver flowering 2	0.000
	CRR073314	Silver flowering 3	0.000
	CRR073315	Gold flowering 1	15.038
	CRR073316	Gold flowering 2	27.858
	CRR073317	Gold flowering 3	14.559
	CRR073318	Tawny withering 1	2.660
	CRR073319	Tawny withering 2	5.323
	CRR073320	Tawny withering 3	1.854