Gene detail

Detail information of GWHGAAZE018121

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	CDO98414.1	0	unnamed protein product [Coffea canephora]
Swissprot	tr\|Q3ECH2\|Y1670_ARATH	2E-142	Probable receptor-like protein kinase At1g67000 (Precursor)
trEMBL	tr\|A0A068TR32\|A0A068TR32_COFCA	0	Coffea canephora DH200=94 genomic scaffold, scaffold_2 {ECO:0000313\|EMBL:CDO98414.1}
TAIR10	AT5G38260.1	3E-117	Protein kinase superfamily protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000005	gene	15421073	15423321	-
GWHAAZE00000005	mRNA	15421073	15423321	-
GWHAAZE00000005	exon	15422556	15423321	-
GWHAAZE00000005	exon	15421073	15422172	-
GWHAAZE00000005	CDS	15422556	15423321	-
GWHAAZE00000005	CDS	15421073	15422172	-

Transcript Sequence
>GWHTAAZE018143 ATGCTCCGAAACACGAGTTTTCAACCACCCTCTCAGTCATCTAATTTACACTCCACCATCATTATTCTCCTAGTGTTGTTCATCATTTCAGCATGTTACTGTGCTGATGATGAACAATTCACCAAATGTGCTACCCCTTATGATTGTGGAATTGTAAAGGGCATTGGGTATCCTTTTTGGGGTGATGGGAGGCCCTCGTACTGTGGCCGCCCAGGATTTGAACTCCAATGCCGTTTTAATCAGTACCCAATCACTAGTGGGGATTTTCAACCATTCCGAGTGCTTGAAATTGATCAATCCTTTAACACAGGGATTATTGCACTTGATGATCTATGGAGTGATATATGTTCCCAAATCTTCAACGTCACGAACTTCAACCCCTTCAAAGCTTCTCGAGCAACTCCAAATCTCTACATCTTATATGGTTGTACCTCAGAGGTTATAGCACAGGTGCAGGTTCAGAGTAATGTTACATGTCCCCTAAATGGCGAGAATGGTGTTGTGTTCATTGGATTTGATTCAATGATGGAAGGATGCAACAAGAGTATTTCAGTTCCAGTTCGTTTAACAGCTTTCCGCGAGCTTTGGGATGGGAAGTTGACATTGCAAGAAGCTGTAAATCAGGGCTTTGATGTTCAGTATGATGCACCCATGTCAGCCTGTTCAGACTGTGAGGCTTCTGGAGGGATTTGCGGGACTAATTCAACTTCTGATTTTGTTTGTTTTTGTCGAGACAAACCTCATCCTCTAATTTGTCGAAAACATGGATCTTCTGCTGTGGGAATCGGTGTTGTGATTTGTCTCATTATATTCTACTGTAGACACAATAAATTATCGATGGTATTCTGGACGAAGGAAACAAAAGTTAACCTGAACGTTGAAGCCTTCATCAAGAAATATGGATCCTTGGCTCCAAAGAGATACAGCTATTCAGATATCAAGAAAATGACAAACTGTATGAGAGATAAGCTTGGGGAAGGAGGCTATGGTGGCGTTTACAAAGGAAAACTAATCGATGGCCGCCTTGTGGCAGTGAAGATCCTTAAAGCATCCAAAGGGAACGGAGAGGAATTCATCAACGAGGTTGCAAGCATTAGTAATACTTCCCATGTAAACGTTGTCACCCTTGTAGGATTCTGTCTCGAGGGTCACAAAAGAGCTCTCATTTATGACTTCATGGCCAACGGATCTCTTGAAAAGTTTATCTACGGCGGTAGTCATTTGAAGTCCAACGGTGATCATTTGGGGTGGGAAAAATTGTACGAAATAGCTATGGGGATAGCTCAAGGGCTTGAGTACTTGCATCGTGGTTGCAACACAAGGATACTGCATTTCGACATAAAACCTCACAACATTCTTCTCGACGAAGACTTTTGTCCAAAGATAGCTGATTTCGGGCTTGCAAAACTATGCGCTAGAAAAGAGAGTATTGTTTCAATGCTGGGAGCTAGAGGCACCATAGGGTATATTGCTCCTGAAGTGTTTAGTAGAAACTTTGGAGGAGTGTCGCATAAGGCTGATGTGTATAGCTACGGAATGATGGTTCTTGAAATAGTTGGGGGTCGAAAAAACGTGGATAGTAGAGTGAGTCATTCTAGTGAGATATATTTTCCAGAGTATGTTTATAGCCGCCTTGCGCTAGATGAAGAACTAGGGCTGGAAGATGTGATGAGCAAAGAAGAAAATGAAATTGCGAGGAAGATGACGTTGGTGGGTTTGTGGTGCATACAGACTGATCCATCACAAAGGCCTTCAATGAATAAGGTGATGGATATGCTGGAAGGAAGCGCAGAAGCCCTGGAAATACCTCCGAGACCCTTCTTATGTTCTTCGGAACGATCAACAGTGTCTATTATATCCACGTAG

Network for GWHGAAZE018121

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF13947.7	GUB_WAK_bind	43	103	1.80E-11
PF14380.7	WAK_assoc	174	246	6.00E-15
PF00069.26	Pkinase	322	591	1.70E-45

Protein Sequence

Gene family

Gene family	subfamily
Protein Kinases Family	RLK-Pelle_LRK10L-2

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0006468	biological_process	protein phosphorylation
GO:0004672	molecular_function	protein kinase activity
GO:0005524	molecular_function	ATP binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	2.197
	SRR3591706	second leaf	0.813
	SRR3591707	mature leaf	0.441
	SRR3591708	Shoot apex	1.133
	SRR3591709	Stem	2.831
	SRR3591710	White floral bud	0.509
	SRR3591711	White flower	0.869
	SRR3591712	Green floral bud	0.512
	SRR3591713	Yellow flower	1.792
SRP173429	SRR8316895	Juvenile bud stage	0.253
	SRR8316896	Juvenile bud stage	0.520
	SRR8316897	Juvenile bud stage	0.000
	SRR8316894	Third green stage	0.331
	SRR8316900	Third green stage	0.125
	SRR8316901	Third green stage	0.270
	SRR8316898	Complete white stage	0.115
	SRR8316899	Complete white stage	0.985
	SRR8316903	Complete white stage	0.150
	SRR8316902	Silver flowering stage	0.184
	SRR8316904	Silver flowering stage	0.240
	SRR8316905	Silver flowering stage	0.108
	SRR8316906	Gold flowering stage	1.977
	SRR8316907	Gold flowering stage	0.952
	SRR8316908	Gold flowering stage	4.586
SRP132670	SRR6706286	Control	0.274
	SRR6706287	Light intensity 50%	0.296
	SRR6706288	Light intensity 20%	0.209
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	0.489
	CNS0095593	Slightly white alabastrum(diploid) 2	0.740
	CNS0095594	Slightly white alabastrum(diploid) 3	0.509
	CNS0095595	Whole white alabastrum(diploid) 2	0.500
	CNS0095596	Whole white alabastrum(diploid) 3	0.000
	CNS0095597	Whole white alabastrum(diploid) 4	0.250
	CNS0095598	Silvery flower (diploied) 1	0.591
	CNS0095599	Silvery flower (diploied) 2	0.783
	CNS0095600	Silvery flower (diploied) 3	0.420
	CNS0095601	Golden flower (diploid) 1	1.265
	CNS0095602	Golden flower (diploid) 2	0.719
	CNS0095603	Golden flower (diploid) 3	0.470
	CNS0095604	Slightly white alabastrum(tetraploid) 1	0.180
	CNS0095605	Slightly white alabastrum(tetraploid) 2	0.000
	CNS0095606	Slightly white alabastrum(tetraploid) 3	0.061
	CNS0095607	Whole white alabastrum(tetraploid) 1	0.104
	CNS0095608	Whole white alabastrum(tetraploid) 2	0.000
	CNS0095609	Whole white alabastrum(tetraploid) 3	0.000
	CNS0095610	Silvery flower (tetraploid) 1	0.107
	CNS0095611	Silvery flower (tetraploid) 2	0.000
	CNS0095612	Silvery flower (tetraploid) 3	0.027
	CNS0095613	Golden flower (tetraploid) 1	0.119
	CNS0095614	Golden flower (tetraploid) 2	0.467
	CNS0095615	Golden flower (tetraploid) 3	0.000
CRA001975	CRR073297	Stem 1	0.543
	CRR073298	Stem 2	0.218
	CRR073299	Stem 3	0.744
	CRR073300	Leaf 1	0.131
	CRR073301	Leaf 2	0.206
	CRR073302	Leaf 3	0.242
	CRR073303	Juvenile bud 1	0.344
	CRR073304	Juvenile bud 2	0.000
	CRR073305	Juvenile bud 3	0.254
	CRR073306	Third green 1	0.023
	CRR073307	Third green 2	0.000
	CRR073308	Third green 3	0.000
	CRR073309	Second white 1	0.001
	CRR073310	Second white 2	0.109
	CRR073311	Second white 3	0.142
	CRR073312	Silver flowering 1	0.413
	CRR073313	Silver flowering 2	0.282
	CRR073314	Silver flowering 3	0.569
	CRR073315	Gold flowering 1	0.289
	CRR073316	Gold flowering 2	0.763
	CRR073317	Gold flowering 3	1.287
	CRR073318	Tawny withering 1	5.988
	CRR073319	Tawny withering 2	7.689
	CRR073320	Tawny withering 3	3.412