Gene detail

Detail information of GWHGAAZE018119

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	EYU19011.1	1.8629E-146	hypothetical protein MIMGU_mgv1a007108mg [Erythranthe guttata]
Swissprot	tr\|P29620\|CDKD1_ORYSJ	3E-132	Cyclin-dependent kinase D-1
trEMBL	tr\|A0A022PT91\|A0A022PT91_ERYGU	7E-147	Uncharacterized protein {ECO:0000313\|EMBL:EYU19011.1}
TAIR10	AT1G73690.1	6E-104	cyclin-dependent kinase D1;1

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000005	gene	15405584	15408474	-
GWHAAZE00000005	mRNA	15405584	15408474	-
GWHAAZE00000005	exon	15408435	15408474	-
GWHAAZE00000005	exon	15408227	15408327	-
GWHAAZE00000005	exon	15407620	15407918	-
GWHAAZE00000005	exon	15407431	15407539	-
GWHAAZE00000005	exon	15405584	15405712	-
GWHAAZE00000005	CDS	15408435	15408474	-
GWHAAZE00000005	CDS	15408227	15408327	-
GWHAAZE00000005	CDS	15407620	15407918	-
GWHAAZE00000005	CDS	15407431	15407539	-
GWHAAZE00000005	CDS	15405584	15405712	-

Transcript Sequence
>GWHTAAZE018141 ATGGAGGAGGAATACGAGTATCTTCTAGGGTTTCATACTTTGGATCATTTACTCACAAAGAAAGTAGCAGATCGTTACCTTAAGCGTGAAGTCCTTGGAGAAGGTACCTACGGAGTCGTATACAAAGCCATCGATACTAAAACAGGACAAACAGTTGCAATTAAGAAAATTCGTTTGGGGAAGCAGAAGGAAGGGGTTAATTTCACTGCACTTAGGGAAATTAAGCTGCTGAAAGAACTCAAGGATCCGAATATAATAGAGTTGATTGATGCGTTCCCTCATAAGGGGAACTTGCATCTCGTTTTTGAGTTCATGGAGACTGATCTTGAAGCTGTTATTCGCGATAGAAACATCTTTCTTTCACCTGCTGATATAAAGTCATATCTTCAGATGACACTGAAAGGGCTTGCTTTTTGCCACAAGAAATGGGTCCTGCACAGAGATATGAAACCGAACAACTTGTTGATAGGACCCCGTGGACAGCTTAAACTTGCAGATTTTGGTTTAGCACGTATATTTGGGAGCCCGGACCGACGGTTCACACACCAGGTCTTCGCCCGTTGGTATAGAGCGCCTGAGCTGTTGTTTGGTGCCAAGCAATATGGTCCTGGGGTGGATGTTTGGGCTGCAGCTTGTATATTTGCTGAACTACTCTTACGCCGACCTTTTTGCAGGTGA

Network for GWHGAAZE018119

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00069.26	Pkinase	28	224	4.90E-61

Protein Sequence

Gene family

Gene family	subfamily
Protein Kinases Family	CMGC_CDK-CDK7

KEGG pathway

KO	Enzyme	pathway	mapID
K02202	CDK7	Basal transcription factors	map03022
		Nucleotide excision repair	map03420
		Cell cycle	map04110

Gene Ontology

GO term	Ontology	Name
GO:0006468	biological_process	protein phosphorylation
GO:0004672	molecular_function	protein kinase activity
GO:0005524	molecular_function	ATP binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	27.807
	SRR3591706	second leaf	21.552
	SRR3591707	mature leaf	14.474
	SRR3591708	Shoot apex	24.424
	SRR3591709	Stem	28.597
	SRR3591710	White floral bud	29.809
	SRR3591711	White flower	42.928
	SRR3591712	Green floral bud	32.021
	SRR3591713	Yellow flower	33.150
SRP173429	SRR8316895	Juvenile bud stage	24.349
	SRR8316896	Juvenile bud stage	24.924
	SRR8316897	Juvenile bud stage	13.364
	SRR8316894	Third green stage	9.960
	SRR8316900	Third green stage	33.857
	SRR8316901	Third green stage	26.820
	SRR8316898	Complete white stage	19.506
	SRR8316899	Complete white stage	48.549
	SRR8316903	Complete white stage	25.193
	SRR8316902	Silver flowering stage	20.469
	SRR8316904	Silver flowering stage	26.776
	SRR8316905	Silver flowering stage	11.537
	SRR8316906	Gold flowering stage	40.431
	SRR8316907	Gold flowering stage	40.280
	SRR8316908	Gold flowering stage	42.484
SRP132670	SRR6706286	Control	21.660
	SRR6706287	Light intensity 50%	22.468
	SRR6706288	Light intensity 20%	25.044
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	13.465
	CNS0095593	Slightly white alabastrum(diploid) 2	12.488
	CNS0095594	Slightly white alabastrum(diploid) 3	12.227
	CNS0095595	Whole white alabastrum(diploid) 2	15.305
	CNS0095596	Whole white alabastrum(diploid) 3	18.310
	CNS0095597	Whole white alabastrum(diploid) 4	18.375
	CNS0095598	Silvery flower (diploied) 1	21.624
	CNS0095599	Silvery flower (diploied) 2	17.593
	CNS0095600	Silvery flower (diploied) 3	44.112
	CNS0095601	Golden flower (diploid) 1	12.516
	CNS0095602	Golden flower (diploid) 2	38.346
	CNS0095603	Golden flower (diploid) 3	36.014
	CNS0095604	Slightly white alabastrum(tetraploid) 1	20.917
	CNS0095605	Slightly white alabastrum(tetraploid) 2	17.375
	CNS0095606	Slightly white alabastrum(tetraploid) 3	40.195
	CNS0095607	Whole white alabastrum(tetraploid) 1	14.639
	CNS0095608	Whole white alabastrum(tetraploid) 2	14.829
	CNS0095609	Whole white alabastrum(tetraploid) 3	30.710
	CNS0095610	Silvery flower (tetraploid) 1	47.811
	CNS0095611	Silvery flower (tetraploid) 2	42.794
	CNS0095612	Silvery flower (tetraploid) 3	35.587
	CNS0095613	Golden flower (tetraploid) 1	21.355
	CNS0095614	Golden flower (tetraploid) 2	36.310
	CNS0095615	Golden flower (tetraploid) 3	40.372
CRA001975	CRR073297	Stem 1	20.130
	CRR073298	Stem 2	20.640
	CRR073299	Stem 3	17.527
	CRR073300	Leaf 1	20.418
	CRR073301	Leaf 2	21.957
	CRR073302	Leaf 3	17.858
	CRR073303	Juvenile bud 1	21.521
	CRR073304	Juvenile bud 2	14.788
	CRR073305	Juvenile bud 3	24.405
	CRR073306	Third green 1	12.335
	CRR073307	Third green 2	13.286
	CRR073308	Third green 3	12.415
	CRR073309	Second white 1	19.836
	CRR073310	Second white 2	18.878
	CRR073311	Second white 3	18.567
	CRR073312	Silver flowering 1	15.932
	CRR073313	Silver flowering 2	16.787
	CRR073314	Silver flowering 3	14.957
	CRR073315	Gold flowering 1	13.547
	CRR073316	Gold flowering 2	15.624
	CRR073317	Gold flowering 3	7.882
	CRR073318	Tawny withering 1	28.011
	CRR073319	Tawny withering 2	24.305
	CRR073320	Tawny withering 3	29.328