Gene detail

Detail information of GWHGAAZE018050

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_002512003.1	1.04179E-68	hypothetical protein RCOM_1618730 [Ricinus communis]
Swissprot	tr\|Q6J9S1\|RA211_ARATH	3E-25	Ethylene-responsive transcription factor RAP2-11
trEMBL	tr\|B9RE64\|B9RE64_RICCO	4E-69	Putative uncharacterized protein {ECO:0000313\|EMBL:EEF50672.1}
TAIR10	AT5G19790.1	6E-15	related to AP2 11

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000005	gene	14098841	14099503	+
GWHAAZE00000005	mRNA	14098841	14099503	+
GWHAAZE00000005	exon	14098841	14099503	+
GWHAAZE00000005	CDS	14098841	14099503	+

Transcript Sequence
>GWHTAAZE018072 ATGCCTCATCAAACGCCAAGCACCTTTCAAATTGTTCAAAAAACACAACCAGTTAACCTTCTAGAAAGATCAAATAATATCAATAATGAAGAAAGAAGGTTCCTTGGAGTGAGAAAAAGGCCTTCAGGCAAATGGGTAGCTGAAATCAAAGACTCCTCACAAAAGCTAAGGCTGTGGCTAGGCACTTTTGAAAAGGCTGAGGAAGCTGCCATGGCTTATGATAGTGCGGCTCGGCTCTTAAGAGGGAGAAATGCAAAGACAAATTTTGCACATAATGGAATCATTACCACCCATGAAGAGAATTGTAATTTGTTGGGTAAGAATCCGAGGCTTTATCAGCTTCTTAAGCATGCTTTTATGAAGAATTTGCAAAAGTCTTTGTCGCGCAATTTTAATAGAATTATTCAGAATGAGAGTAATTGTGTTGGTAATGGTGAGGATTTTGACGCGCTTGTGGAAGAAACTATTGTTTGTTCTTCGAGCGAGTGTAAAAATGGATTTGTGAGTTATTGTGGTGGTGATCAAGAAAGGGAGGGGCTTTTGAGGCTTTCACTTGGAAGTTCTAAGGTTTATTCCTCTGTTATTGTTGCTCCTTCATTTAGTTCTTCTTTGAGTACTACTCAAGGAGGGGAAGAGGAAATCAACCGTATTCGATCATTATGA

Network for GWHGAAZE018050

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00847.21	AP2	36	82	7.10E-11

Protein Sequence

Gene family

Gene family	subfamily
Transcription Factors Family	AP2/ERF-ERF

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0006355	biological_process	regulation of transcription, DNA-templated
GO:0003700	molecular_function	DNA-binding transcription factor activity
GO:0003677	molecular_function	DNA binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	0.000
	SRR3591706	second leaf	0.000
	SRR3591707	mature leaf	0.000
	SRR3591708	Shoot apex	0.280
	SRR3591709	Stem	0.124
	SRR3591710	White floral bud	0.114
	SRR3591711	White flower	0.422
	SRR3591712	Green floral bud	3.787
	SRR3591713	Yellow flower	0.174
SRP173429	SRR8316895	Juvenile bud stage	2.665
	SRR8316896	Juvenile bud stage	5.283
	SRR8316897	Juvenile bud stage	2.090
	SRR8316894	Third green stage	2.059
	SRR8316900	Third green stage	4.922
	SRR8316901	Third green stage	4.846
	SRR8316898	Complete white stage	0.620
	SRR8316899	Complete white stage	1.674
	SRR8316903	Complete white stage	0.993
	SRR8316902	Silver flowering stage	0.786
	SRR8316904	Silver flowering stage	1.049
	SRR8316905	Silver flowering stage	0.297
	SRR8316906	Gold flowering stage	1.258
	SRR8316907	Gold flowering stage	1.633
	SRR8316908	Gold flowering stage	0.359
SRP132670	SRR6706286	Control	3.798
	SRR6706287	Light intensity 50%	2.834
	SRR6706288	Light intensity 20%	2.571
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	5.318
	CNS0095593	Slightly white alabastrum(diploid) 2	3.139
	CNS0095594	Slightly white alabastrum(diploid) 3	8.494
	CNS0095595	Whole white alabastrum(diploid) 2	2.598
	CNS0095596	Whole white alabastrum(diploid) 3	3.768
	CNS0095597	Whole white alabastrum(diploid) 4	2.156
	CNS0095598	Silvery flower (diploied) 1	2.497
	CNS0095599	Silvery flower (diploied) 2	4.214
	CNS0095600	Silvery flower (diploied) 3	2.274
	CNS0095601	Golden flower (diploid) 1	1.116
	CNS0095602	Golden flower (diploid) 2	0.899
	CNS0095603	Golden flower (diploid) 3	0.440
	CNS0095604	Slightly white alabastrum(tetraploid) 1	3.894
	CNS0095605	Slightly white alabastrum(tetraploid) 2	5.324
	CNS0095606	Slightly white alabastrum(tetraploid) 3	2.039
	CNS0095607	Whole white alabastrum(tetraploid) 1	4.156
	CNS0095608	Whole white alabastrum(tetraploid) 2	1.496
	CNS0095609	Whole white alabastrum(tetraploid) 3	7.677
	CNS0095610	Silvery flower (tetraploid) 1	3.478
	CNS0095611	Silvery flower (tetraploid) 2	0.463
	CNS0095612	Silvery flower (tetraploid) 3	0.000
	CNS0095613	Golden flower (tetraploid) 1	0.000
	CNS0095614	Golden flower (tetraploid) 2	0.000
	CNS0095615	Golden flower (tetraploid) 3	0.000
CRA001975	CRR073297	Stem 1	3.115
	CRR073298	Stem 2	5.145
	CRR073299	Stem 3	2.952
	CRR073300	Leaf 1	0.496
	CRR073301	Leaf 2	0.676
	CRR073302	Leaf 3	1.439
	CRR073303	Juvenile bud 1	0.145
	CRR073304	Juvenile bud 2	0.000
	CRR073305	Juvenile bud 3	0.000
	CRR073306	Third green 1	0.000
	CRR073307	Third green 2	0.121
	CRR073308	Third green 3	0.000
	CRR073309	Second white 1	0.000
	CRR073310	Second white 2	0.073
	CRR073311	Second white 3	0.000
	CRR073312	Silver flowering 1	0.000
	CRR073313	Silver flowering 2	0.000
	CRR073314	Silver flowering 3	0.000
	CRR073315	Gold flowering 1	0.000
	CRR073316	Gold flowering 2	0.000
	CRR073317	Gold flowering 3	0.000
	CRR073318	Tawny withering 1	0.514
	CRR073319	Tawny withering 2	0.635
	CRR073320	Tawny withering 3	0.148