Gene detail

Detail information of GWHGAAZE018035

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_009766539.1	0	PREDICTED: uridine-cytidine kinase C-like isoform X2 [Nicotiana sylvestris]
Swissprot	tr\|Q8VYB2\|UKL3_ARATH	4E-14	Putative uracil phosphoribosyltransferase
trEMBL	tr\|A0A067FQ75\|A0A067FQ75_CITSI	0	Uncharacterized protein {ECO:0000313\|EMBL:KDO65602.1}
TAIR10	AT1G73980.1	0	Phosphoribulokinase / Uridine kinase family

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000005	gene	13912088	13920551	+
GWHAAZE00000005	mRNA	13912088	13920551	+
GWHAAZE00000005	exon	13912088	13912427	+
GWHAAZE00000005	exon	13914178	13914292	+
GWHAAZE00000005	exon	13914565	13914760	+
GWHAAZE00000005	exon	13914847	13915008	+
GWHAAZE00000005	exon	13915124	13915297	+
GWHAAZE00000005	exon	13916220	13916414	+
GWHAAZE00000005	exon	13917161	13917283	+
GWHAAZE00000005	exon	13917355	13917467	+
GWHAAZE00000005	exon	13917813	13917942	+
GWHAAZE00000005	exon	13919475	13919747	+
GWHAAZE00000005	exon	13920083	13920551	+
GWHAAZE00000005	CDS	13912088	13912427	+
GWHAAZE00000005	CDS	13914178	13914292	+
GWHAAZE00000005	CDS	13914565	13914760	+
GWHAAZE00000005	CDS	13914847	13915008	+
GWHAAZE00000005	CDS	13915124	13915297	+
GWHAAZE00000005	CDS	13916220	13916414	+
GWHAAZE00000005	CDS	13917161	13917283	+
GWHAAZE00000005	CDS	13917355	13917467	+
GWHAAZE00000005	CDS	13917813	13917942	+
GWHAAZE00000005	CDS	13919475	13919747	+
GWHAAZE00000005	CDS	13920083	13920301	+
GWHAAZE00000005	three_prime_UTR	13920302	13920551	+

Transcript Sequence
>GWHTAAZE018057 ATGGCTGAGGATGCTTCTGCCAATGCTGAATCACCAAGGCGACGGTCTGGCCTGTTAAGAGATCAAGTCCAATTGGTTAAAAGGAAGGACTCCAAACGTTATGAGATTGTCCCAATCCAAGATCCTCTGTCGTTTGAGAAAGGTTTCTTTATAGTAATCCGAGCTTGCCAGTTGTTGTCTCAAAAGAACGAGGGGATAATATTTGTAGGGGTAGCCGGTCCCTCTGGGGCCGGAAAAACTGTGTTTACGGACAAGGTTCTCAACTTTATGCCCAGCATTGCTGTCATCAGCATGGACAACTACAATGATTCCAGTCGTATTGTTGATGGAAACTTTGATGATCCACGCTTGACAGATTATGACACACTGCTTGAGAACATCCGTGGTTTAAAAGAAGGGAGGGCCGTTCAAGTTCCTATATATGATTTTAAAACTAGCTCTCGTGTAGGTTACAGGACAATTGAAGTCCCTAGCTCCCGTATTGTGATTGTTGAAGGCATCTACGCTTTAAGTGAAAAATTGCGGCCTTTAATAGATCTCCGTGTGTCTGTTACTGGCGGAGTACATTTTGACCTTGTCAAACGGGTGTTGAGGGACATTCAACGTGCTGGACAAGAGCCTGAAGAGATAATCCAGCAAATCTCTGAAACGTGGACATCTACAGAATTTGAACAATTCTTTTATCATTTTTACGAACAGGTATATCCTATGTACAAGGCTTTTATCGAGCCGGATCTACAAACAGCCCATATAAAGATTATTAACAAATTCAATCCATTTTCTGGATTCCAGAATCCCACCTATATATTAAAGTCAACAAGAGCTGTGACTCTGGATGAAATCAAGGCAGTTATTTCTGAAGAACACAGAGAAACTACAGAGGAAACATATGATATATATCTTCTGCCACCTGGTGAAGATCCTGAAGCATGCCAATCCTATCTGAGGATGAGGAACAGGGATGGAAAATACAATCTCATGTTTGAGGAATGGGTTACAGATAGTCCATTCATCATATCACCTAGAATTACTTTTGAAGTTAGTGTACGTCTTCTTGGCGGACTGATGGCTTTAGGGTACACAATTGCGACCATTCTAAAAAGAAGCAGCCATATCTTCAGTGATGAGAGGGTGTGTGTGAAAACTGATTATTTAGAACAACTCAACCGCAAGTATGTTCAGGTCCAAGGAAGAGACCGCTTATACGTGAAATATATTGCTGAGCAGCTGGGGCTGGATGGTTCATATGTTTCTCGCACTTACATTGAACAAATTCAGTTGGAGAAGCTTGTGAATGACGTTATGGCATTGCCTGATGATCTGAAGACAAAGCTCAGCTTAGATGATGATTTGGTTTCGAGCCCTAAAGAAGCATTATCTCGAGCCTCTGCAGATAGGAGAACCAAATATCTCAATCGTGGTGGCATGTCACACTCCTATTCAAATCAGCGGGAAAAGAGTATGTCCAGGCTGACGAAACTTGCTGTTAATAATAGGAGATATGATGGAAGAACCCCAGCAGATTCACCAGCAACACTAGCTAACCAGGGAGTCATTACTCAACTTTCAGAACAAATTTCCACACTAAACGAGAGAATGGATGAGTTCACATCACGTATAGAAGAGCTAAACTCAAAATTCTCTCTCAGGAAAGCTTCCGTTAGCCAACAGAATTTGCCTTTGCAGGCTGAAGGCTGCAACAGCTCTGCACCCACCTCTCTGTTCGTTGCTGGCTTAGGCAATGGTTCACTGACTGCATCACAACTAGCACATTCCGCCTCTTCTTCCCAATTAGCAAGGGAGTCTGCAATGCTTGAAGAGGTATTACTTATTGGGAGGGGGCAACGCCAAATCATGCATCAATTAGACAATCTGAATACATTGCTACGCGAGTACTGGGGAGAAAGATCCCGCCAAGGAAGAACAGACCGTACAGTCAGGGCCTTAGATGCTGAAGCAATTGGCGTGCCATTAATTCTGACTTTGGCAATTGGGGGCTTGGGTATCTACTTGTTCAGGACCCTTTCAACCCAGAAGTAACTGCTATGCTGAAGTACTTCTTTTGCAGCATAATAGTGGATAGGTGTATCACTTTGTTGTATTGTTCACTAAAAAGGCGGTATAGTAACGTTGTGACTGTATGCATCAGAGATTTCAGCCTGGAAAAATAGGGTTTTGATACTGTCGGCAATACTATACTTGATTTCAAGCTTTTGAGAAAGACAGAAATTTTGCTGACTACTAATGTACGTGTAATGCCCAATTTTGTCGACCTTTTTTTATTTTTGTG

Network for GWHGAAZE018035

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00485.19	PRK	69	216	2.40E-19
PF01928.22	CYTH	288	421	3.40E-16

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K00876	udk, UCK	Metabolic pathways	map01100
		Pyrimidine metabolism	map00240
		Drug metabolism - other enzymes	map00983

Gene Ontology

GO term	Ontology	Name
GO:0005524	molecular_function	ATP binding
GO:0016301	molecular_function	kinase activity

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	31.181
	SRR3591706	second leaf	34.350
	SRR3591707	mature leaf	77.414
	SRR3591708	Shoot apex	17.744
	SRR3591709	Stem	28.322
	SRR3591710	White floral bud	46.056
	SRR3591711	White flower	34.785
	SRR3591712	Green floral bud	20.729
	SRR3591713	Yellow flower	19.193
SRP173429	SRR8316895	Juvenile bud stage	9.898
	SRR8316896	Juvenile bud stage	12.754
	SRR8316897	Juvenile bud stage	7.947
	SRR8316894	Third green stage	7.025
	SRR8316900	Third green stage	26.211
	SRR8316901	Third green stage	24.625
	SRR8316898	Complete white stage	26.605
	SRR8316899	Complete white stage	35.579
	SRR8316903	Complete white stage	40.037
	SRR8316902	Silver flowering stage	16.855
	SRR8316904	Silver flowering stage	25.547
	SRR8316905	Silver flowering stage	13.356
	SRR8316906	Gold flowering stage	26.302
	SRR8316907	Gold flowering stage	23.509
	SRR8316908	Gold flowering stage	28.367
SRP132670	SRR6706286	Control	26.212
	SRR6706287	Light intensity 50%	26.513
	SRR6706288	Light intensity 20%	26.915
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	12.370
	CNS0095593	Slightly white alabastrum(diploid) 2	15.698
	CNS0095594	Slightly white alabastrum(diploid) 3	13.394
	CNS0095595	Whole white alabastrum(diploid) 2	20.631
	CNS0095596	Whole white alabastrum(diploid) 3	17.701
	CNS0095597	Whole white alabastrum(diploid) 4	18.135
	CNS0095598	Silvery flower (diploied) 1	22.403
	CNS0095599	Silvery flower (diploied) 2	28.773
	CNS0095600	Silvery flower (diploied) 3	45.020
	CNS0095601	Golden flower (diploid) 1	22.162
	CNS0095602	Golden flower (diploid) 2	28.602
	CNS0095603	Golden flower (diploid) 3	27.586
	CNS0095604	Slightly white alabastrum(tetraploid) 1	18.768
	CNS0095605	Slightly white alabastrum(tetraploid) 2	15.726
	CNS0095606	Slightly white alabastrum(tetraploid) 3	22.161
	CNS0095607	Whole white alabastrum(tetraploid) 1	15.534
	CNS0095608	Whole white alabastrum(tetraploid) 2	16.862
	CNS0095609	Whole white alabastrum(tetraploid) 3	26.009
	CNS0095610	Silvery flower (tetraploid) 1	44.406
	CNS0095611	Silvery flower (tetraploid) 2	57.267
	CNS0095612	Silvery flower (tetraploid) 3	56.871
	CNS0095613	Golden flower (tetraploid) 1	23.240
	CNS0095614	Golden flower (tetraploid) 2	36.260
	CNS0095615	Golden flower (tetraploid) 3	29.092
CRA001975	CRR073297	Stem 1	13.160
	CRR073298	Stem 2	11.570
	CRR073299	Stem 3	9.831
	CRR073300	Leaf 1	20.567
	CRR073301	Leaf 2	18.322
	CRR073302	Leaf 3	13.322
	CRR073303	Juvenile bud 1	21.191
	CRR073304	Juvenile bud 2	21.080
	CRR073305	Juvenile bud 3	25.023
	CRR073306	Third green 1	32.001
	CRR073307	Third green 2	24.825
	CRR073308	Third green 3	30.709
	CRR073309	Second white 1	26.722
	CRR073310	Second white 2	24.948
	CRR073311	Second white 3	21.578
	CRR073312	Silver flowering 1	11.857
	CRR073313	Silver flowering 2	11.963
	CRR073314	Silver flowering 3	10.085
	CRR073315	Gold flowering 1	10.562
	CRR073316	Gold flowering 2	12.672
	CRR073317	Gold flowering 3	6.950
	CRR073318	Tawny withering 1	8.675
	CRR073319	Tawny withering 2	10.694
	CRR073320	Tawny withering 3	8.078