Detail information of GWHGAAZE018033


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrXP_010031327.10PREDICTED: serine/threonine-protein kinase 16 [Eucalyptus grandis]
Swissprottr|Q9XF67|PDPK1_ARATH0.0000000063-phosphoinositide-dependent protein kinase 1
trEMBLtr|A0A059D028|A0A059D028_EUCGR0Uncharacterized protein {ECO:0000313|EMBL:KCW83786.1}
TAIR10AT5G08160.11E-168serine/threonine protein kinase 3

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000005gene1389123013895183-
GWHAAZE00000005mRNA1389123013895183-
GWHAAZE00000005exon1389123013891455-
GWHAAZE00000005exon1389162113891745-
GWHAAZE00000005exon1389261413892910-
GWHAAZE00000005exon1389336613893509-
GWHAAZE00000005exon1389412413894266-
GWHAAZE00000005exon1389497013895183-
GWHAAZE00000005CDS1389497013895183-
GWHAAZE00000005CDS1389412413894266-
GWHAAZE00000005CDS1389336613893509-
GWHAAZE00000005CDS1389261413892910-
GWHAAZE00000005CDS1389162113891745-
GWHAAZE00000005CDS1389123013891455-
Transcript Sequence

Network for GWHGAAZE018033

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation
CFinderModule0049map04624 Toll and Imd signaling pathway
Transcription factor GeBP family Transcription factor GeBP
Protein Kinases NAK family Protein Kinases NAK
Ubiquitin_UBC family Ubiquitin_UBC family


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF00069.26Pkinase1813721.60E-22
Protein Sequence

Gene family

Gene familysubfamily
Protein Kinases FamilyNAK

KEGG pathway

KO Enzyme pathway mapID
--------

Gene Ontology

GO term OntologyName
GO:0006468biological_processprotein phosphorylation
GO:0004672molecular_functionprotein kinase activity
GO:0005524molecular_functionATP binding

Expression pattern

Created with Highcharts 5.0.4Chart context menuExpression pattern for GWHGAAZE018033.youngest leafsecond leafmature leafShoot apexStemWhite floral budWhite flowerGreen floral budYellow flowerJuvenile bud stage 1Juvenile bud stage 2Juvenile bud stage 3Third green stage 1Third green stage 2Third green stage 3Complete white stage 1Complete white stage 2Complete white stage 3Silver flowering stage 1Silver flowering stage 2Silver flowering stage 3Gold flowering stage 1Gold flowering stage 2Gold flowering stage 3Control 1Light intensity 50%Light intensity 20%Slightly white alabastrum(diploid) 1Slightly white alabastrum(diploid) 2Slightly white alabastrum(diploid) 3Whole white alabastrum(diploid) 1Whole white alabastrum(diploid) 2Whole white alabastrum(diploid) 3Silvery flower (diploied) 1Silvery flower (diploied) 2Silvery flower (diploied) 3Golden flower (diploid) 1Golden flower (diploid) 2Golden flower (diploid) 3Slightly white alabastrum(tetraploid) 1Slightly white alabastrum(tetraploid) 2Slightly white alabastrum(tetraploid) 3Whole white alabastrum(tetraploid) 1Whole white alabastrum(tetraploid) 2Whole white alabastrum(tetraploid) 3Silvery flower (tetraploid) 1Silvery flower (tetraploid) 2Silvery flower (tetraploid) 3Golden flower (tetraploid) 1Golden flower (tetraploid) 2Golden flower (tetraploid) 3Stem 1Stem 2Stem 3Leaf 1Leaf 2Leaf 3Juvenile bud 1Juvenile bud 2Juvenile bud 3Third green 1Third green 2Third green 3Second white 1Second white 2Second white 3Silver flowering 1Silver flowering 2Silver flowering 3Gold flowering 1Gold flowering 2Gold flowering 3Tawny withering 1Tawny withering 2Tawny withering 30102030405060708090100Highcharts.com

Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf52.961
SRR3591706second leaf22.606
SRR3591707mature leaf30.521
SRR3591708Shoot apex31.178
SRR3591709Stem46.188
SRR3591710White floral bud50.571
SRR3591711White flower63.158
SRR3591712Green floral bud40.869
SRR3591713Yellow flower52.065
SRP173429 SRR8316895Juvenile bud stage 24.406
SRR8316896Juvenile bud stage 35.906
SRR8316897Juvenile bud stage 15.534
SRR8316894Third green stage 14.622
SRR8316900Third green stage 47.596
SRR8316901Third green stage 47.169
SRR8316898Complete white stage 36.576
SRR8316899Complete white stage 77.119
SRR8316903Complete white stage 49.061
SRR8316902Silver flowering stage29.247
SRR8316904Silver flowering stage41.406
SRR8316905Silver flowering stage16.281
SRR8316906Gold flowering stage 58.455
SRR8316907Gold flowering stage 49.519
SRR8316908Gold flowering stage 54.937
SRP132670SRR6706286Control35.462
SRR6706287Light intensity 50%37.153
SRR6706288Light intensity 20%38.081
CNP0000432CNS0095592Slightly white alabastrum(diploid) 127.681
CNS0095593Slightly white alabastrum(diploid) 230.362
CNS0095594Slightly white alabastrum(diploid) 327.446
CNS0095595Whole white alabastrum(diploid) 230.267
CNS0095596Whole white alabastrum(diploid) 324.289
CNS0095597Whole white alabastrum(diploid) 426.590
CNS0095598Silvery flower (diploied) 129.830
CNS0095599Silvery flower (diploied) 230.928
CNS0095600Silvery flower (diploied) 373.025
CNS0095601Golden flower (diploid) 134.543
CNS0095602Golden flower (diploid) 265.591
CNS0095603Golden flower (diploid) 367.781
CNS0095604Slightly white alabastrum(tetraploid) 134.705
CNS0095605Slightly white alabastrum(tetraploid) 225.567
CNS0095606Slightly white alabastrum(tetraploid) 344.959
CNS0095607Whole white alabastrum(tetraploid) 124.453
CNS0095608Whole white alabastrum(tetraploid) 222.073
CNS0095609Whole white alabastrum(tetraploid) 339.470
CNS0095610Silvery flower (tetraploid) 164.824
CNS0095611Silvery flower (tetraploid) 264.097
CNS0095612Silvery flower (tetraploid) 360.132
CNS0095613Golden flower (tetraploid) 137.335
CNS0095614Golden flower (tetraploid) 256.484
CNS0095615Golden flower (tetraploid) 358.711
CRA001975CRR073297Stem 147.272
CRR073298Stem 243.348
CRR073299Stem 358.091
CRR073300Leaf 164.028
CRR073301Leaf 268.716
CRR073302Leaf 366.862
CRR073303Juvenile bud 177.236
CRR073304Juvenile bud 284.245
CRR073305Juvenile bud 376.706
CRR073306Third green 193.027
CRR073307Third green 287.264
CRR073308Third green 386.253
CRR073309Second white 185.753
CRR073310Second white 275.239
CRR073311Second white 363.099
CRR073312Silver flowering 171.161
CRR073313Silver flowering 265.258
CRR073314Silver flowering 365.396
CRR073315Gold flowering 144.219
CRR073316Gold flowering 249.285
CRR073317Gold flowering 342.629
CRR073318Tawny withering 180.630
CRR073319Tawny withering 269.400
CRR073320Tawny withering 376.421