Gene detail

Detail information of GWHGAAZE018001

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	CDP18065.1	3.2383E-174	unnamed protein product [Coffea canephora]
Swissprot	tr\|Q9LIH5\|C3H38_ARATH	1E-20	Zinc finger CCCH domain-containing protein 38
trEMBL	tr\|A0A068VB56\|A0A068VB56_COFCA	1E-174	Coffea canephora DH200=94 genomic scaffold, scaffold_202 {ECO:0000313\|EMBL:CDP18065.1}
TAIR10	AT3G26850.2	5E-36	histone-lysine N-methyltransferases

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000005	gene	13391247	13394819	-
GWHAAZE00000005	mRNA	13391247	13394819	-
GWHAAZE00000005	exon	13391247	13391429	-
GWHAAZE00000005	exon	13391795	13393844	-
GWHAAZE00000005	exon	13393977	13394705	-
GWHAAZE00000005	exon	13394803	13394819	-
GWHAAZE00000005	CDS	13394803	13394819	-
GWHAAZE00000005	CDS	13393977	13394705	-
GWHAAZE00000005	CDS	13391795	13393844	-
GWHAAZE00000005	CDS	13391247	13391429	-

Transcript Sequence
>GWHTAAZE018023 ATGGCATTGACTCGTGTGTCATTGACCGTGGTTGATATCTCAGTTGAAGATGCTGACTGCCCGTCAGATAGCAACTTAGAGAATTCTATAAAAGTTCCCAGTCAACATACCAACGATGCTAGCGCTTTCAGACTTCTGCAAGACTATGATTCTGATGAGAGTTTGGAAAACGCGGATGAGACTTGTCTTGAAAGTGTTTGTCCTGCAACAGTCGATACATCAGTTAATGTTGACGATGCAAGTTTGGATGTTGACACGGGTTCCATTCAGATCGACCTCGGATCTAAGGGCCTTTTGGGGTCTGAAAAGGGGCTTACCCCATCTAAATCTCTGGATTCTTCCATAGAGTTAGAAACAATAGTGACGAAAGCTGATCGGACATCTATTGAAACTGGAAAAGTGGAACAAATTATTGATAATAGCCATGGAAATCAAGAATCTATCGACAGTGGCACTTCTCGCACCGCTTTCAAACCAAAAAATGGATTAGAAGCGACCAATGTTGGTTCCACACTTGAGAGTGGTAAGTCTCAGAAGGAAGATGCAAGGAGTACGTCTACTTCATTGAAAGTCGATGAGTTTGGGAGATTGGTTAGAGAAGGAGCTAGTGACAGCGACTCTGATGATGTACGCTATAGTAAAAGGCGTGGAAAAAGAGGCAGAAGTTGGAGTCGAAGTCGATCTCCTCACGATAGGAGGAGGAGGAGTCCTCGGAGAAGAAAGGAGAAACGCAGCCGATCTCGCAGCTGGTCTCCCAAGAAACGAGGTAGAAGCAGGTCTCCTTTAAGGCGTGGGGGCGAATTTGGTGGTGAAAAAGCTAGACGGGAGAAGGGCCAGCTTCCTGATTGCTTTGATTTTCGGCGCGGCAAGTGCTACCGTGGGGCATCGTGTCGGTATCTTCACCATGATTCAGACAAGAGTGATGGGTCAAGGCACTATAAAAGCAAACAGCCGCAGTATCAAGAGCGGCCATCACCTAGTTCAAAGCATTCCGAAAAATCAACTGATCAACTTGTTACTCCAGATCAAGATGGTAAAACATTGGCTACTTTTGCTGCTGAATCTGAAAGGGCTCAAGAGGTAACTGAAGCACTAGATATAGAAAAAGAGATAGTGGAACCTCCCATTCATCTTACTGATGCTGATGACAGAATGTTACCTAGTGAAACTAGAGTTGAAAATTCTTGGATACAGCAGTCTGAAGTTATTCGTTTGGATCCAGTGCACCAGAATACTGATAACCAGCCACAGCAGGTGGACAACTCTTCTGCCTCAGACGGTACAAGTTCTCTGAGCAAGCCACATTCTGAAAATGTTCCTTCTTATCCTTCCCAGTTACCGCCTCCCCCTCCCTCAGTTTCACATGGCACAGATGCCCCATTTCCTCCACAACTTCCCACATATTTTAACATGATGCATTCCTATCAAGCTCCAATTCTTTATCAGCATTCTCATTTCTCTGAACCACCAAACACCTCTTGGCAGCATTCACTGCCCCCGCCTCCGCCACAATCCTCACATCCACCATTTGCAAACAATTTAGCTATGAATGCAGCAACTGCCTCACATGGTGTTTTCCCGCCGTTAGTTAGGCCTTACCTTGCTGAACTGCCAGCTCGTTCCCAGGTTGGTGATTTTCAGCATCTAACGTACCCTCCAATGCACGAATTTGGTCGCCCTCTATCCCACCCGGAGGATATCAGAACAAGTACATTGACAATGACCAATCCCATGACTCAACAATACGGGAGCCCCAGTTTTGTTGGAGAAGACCGATTCTCACGAATTCCAATGGAGAGTTTAAATTCGTCCAATTCATTTGCCCAGGGAAACATGCACCAACAACCTATGCCATTTTCGAGGGAATCACCTGGGAGGAGAATGCAATCTTTCTTTGGTGACAATGTCTATACACATTTGGGTGAGCATGGGAAGGTCAACTCTACCTTGTCAAGATACTCATCAGATTTTCTTGATAGGAACCAGTCATCTGTTGTACCTGATTTTGGAGGATCTAGAATTCCAAATCACTACAATCCTTATGCATCTACTTTTGACCAGCCACTGAGCTCAAAATTCGGTTCGACTATGTTAAATCAAGAACTGGACATACCCTTTGGTAATAAATATGGTGCGTCGTTAAGTTTGAGCCATACTCCAGTTGATGGGCAAGGTGTTGGTAGTCTAGGCTCAAGAAATGTGACTATGTCAAGAAGTTCTGCCCATGCCATTGAGCATTTGCCTCGGCCTAGTGGGGACCAGTATGATCCACTCTTTGACAGCATTGAACCGTCTTCAAAGGGTCAAAAGTTTGAACCAACCGATGAGTCCGATACCATGTTGAGGCTCAGTGGCTCAAATAAGCCACTGGATGGGGAAGAAAACAAACATAAAGTGGCTCTAACTACATCGCTAGACAATGATGAATATGGTGAGACAGCGGATGCAGAAGTTGGAGCTGTAGAAAATGGAAGCCCTAGTGATCCCAATGATGAAGCAACCACACCCGCTGGAGAAATTGAGATCGATCAGGTTAAGATTCCAGGGAAAAGCAAGAAGGGCAAAGATTCCCGATCGATGAAACTTTTCAAAGGTGCCCTTGCTGATTTTGTAAAGGAGGTGTTAAAGCCGTCTTGGAGACAGGGTAATATGAGCAAGGAGGCCTTCAAGACCATTGTCAAGAAGACTGTTGATAAGGTGTCTGGTGCTATGAAGAGCCACCAAATACCCAAGTCCCAGGCAAAGATAAACCAATATATCGATTCATCACAAAGGAAACTGACTAAGCTTGTGATGGGCTATGGGAAGGGAAACATGCATATAGTGTTCAGTAGAACTGTGAGCGATGTACTCTGGAAGGCTACCGCGTGGCATAGATGCCAATGTGTGCGTGATTTTAAGTCCCAAGAGAAGATGTATCTATTGGCAGGTGGTCATATACATTCAAATCTCAGCAAAGTTCTGACAAGGCTCCAAAAC

Network for GWHGAAZE018001

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
--	--	--	--	--

Protein Sequence

>GWHPAAZE018012
MALTRVSLTVVDISVEDADCPSDSNLENSIKVPSQHTNDASAFRLLQDYDSDESLENADETCLESVCPATVDTSVNVDDASLDVDTGSIQIDLGSKGLLGSEKGLTPSKSLDSSIELETIVTKADRTSIETGKVEQIIDNSHGNQESIDSGTSRTAFKPKNGLEATNVGSTLESGKSQKEDARSTSTSLKVDEFGRLVREGASDSDSDDVRYSKRRGKRGRSWSRSRSPHDRRRRSPRRRKEKRSRSRSWSPKKRGRSRSPLRRGGEFGGEKARREKGQLPDCFDFRRGKCYRGASCRYLHHDSDKSDGSRHYKSKQPQYQERPSPSSKHSEKSTDQLVTPDQDGKTLATFAAESERAQEVTEALDIEKEIVEPPIHLTDADDRMLPSETRVENSWIQQSEVIRLDPVHQNTDNQPQQVDNSSASDGTSSLSKPHSENVPSYPSQLPPPPPSVSHGTDAPFPPQLPTYFNMMHSYQAPILYQHSHFSEPPNTSWQHSLPPPPPQSSHPPFANNLAMNAATASHGVFPPLVRPYLAELPARSQVGDFQHLTYPPMHEFGRPLSHPEDIRTSTLTMTNPMTQQYGSPSFVGEDRFSRIPMESLNSSNSFAQGNMHQQPMPFSRESPGRRMQSFFGDNVYTHLGEHGKVNSTLSRYSSDFLDRNQSSVVPDFGGSRIPNHYNPYASTFDQPLSSKFGSTMLNQELDIPFGNKYGASLSLSHTPVDGQGVGSLGSRNVTMSRSSAHAIEHLPRPSGDQYDPLFDSIEPSSKGQKFEPTDESDTMLRLSGSNKPLDGEENKHKVALTTSLDNDEYGETADAEVGAVENGSPSDPNDEATTPAGEIEIDQVKIPGKSKKGKDSRSMKLFKGALADFVKEVLKPSWRQGNMSKEAFKTIVKKTVDKVSGAMKSHQIPKSQAKINQYIDSSQRKLTKLVMGYGKGNMHIVFSRTVSDVLWKATAWHRCQCVRDFKSQEKMYLLAGGHIHSNLSKVLTRLQN

Gene family

Gene family	subfamily
Transcription Factors Family	C3H

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0046872	molecular_function	metal ion binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	12.235
	SRR3591706	second leaf	11.591
	SRR3591707	mature leaf	16.223
	SRR3591708	Shoot apex	21.111
	SRR3591709	Stem	15.610
	SRR3591710	White floral bud	15.503
	SRR3591711	White flower	18.842
	SRR3591712	Green floral bud	17.034
	SRR3591713	Yellow flower	11.328
SRP173429	SRR8316895	Juvenile bud stage	10.957
	SRR8316896	Juvenile bud stage	16.793
	SRR8316897	Juvenile bud stage	6.339
	SRR8316894	Third green stage	7.104
	SRR8316900	Third green stage	16.153
	SRR8316901	Third green stage	15.565
	SRR8316898	Complete white stage	1.728
	SRR8316899	Complete white stage	13.975
	SRR8316903	Complete white stage	9.418
	SRR8316902	Silver flowering stage	5.050
	SRR8316904	Silver flowering stage	9.163
	SRR8316905	Silver flowering stage	3.096
	SRR8316906	Gold flowering stage	11.486
	SRR8316907	Gold flowering stage	12.540
	SRR8316908	Gold flowering stage	12.703
SRP132670	SRR6706286	Control	15.475
	SRR6706287	Light intensity 50%	15.206
	SRR6706288	Light intensity 20%	15.711
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	15.417
	CNS0095593	Slightly white alabastrum(diploid) 2	14.547
	CNS0095594	Slightly white alabastrum(diploid) 3	15.231
	CNS0095595	Whole white alabastrum(diploid) 2	16.440
	CNS0095596	Whole white alabastrum(diploid) 3	15.607
	CNS0095597	Whole white alabastrum(diploid) 4	20.045
	CNS0095598	Silvery flower (diploied) 1	22.211
	CNS0095599	Silvery flower (diploied) 2	14.977
	CNS0095600	Silvery flower (diploied) 3	18.683
	CNS0095601	Golden flower (diploid) 1	23.603
	CNS0095602	Golden flower (diploid) 2	25.297
	CNS0095603	Golden flower (diploid) 3	23.778
	CNS0095604	Slightly white alabastrum(tetraploid) 1	17.975
	CNS0095605	Slightly white alabastrum(tetraploid) 2	16.953
	CNS0095606	Slightly white alabastrum(tetraploid) 3	23.374
	CNS0095607	Whole white alabastrum(tetraploid) 1	18.137
	CNS0095608	Whole white alabastrum(tetraploid) 2	19.348
	CNS0095609	Whole white alabastrum(tetraploid) 3	18.322
	CNS0095610	Silvery flower (tetraploid) 1	18.859
	CNS0095611	Silvery flower (tetraploid) 2	22.218
	CNS0095612	Silvery flower (tetraploid) 3	16.617
	CNS0095613	Golden flower (tetraploid) 1	10.762
	CNS0095614	Golden flower (tetraploid) 2	17.182
	CNS0095615	Golden flower (tetraploid) 3	17.395
CRA001975	CRR073297	Stem 1	26.978
	CRR073298	Stem 2	24.772
	CRR073299	Stem 3	22.260
	CRR073300	Leaf 1	25.399
	CRR073301	Leaf 2	24.244
	CRR073302	Leaf 3	13.585
	CRR073303	Juvenile bud 1	21.066
	CRR073304	Juvenile bud 2	11.029
	CRR073305	Juvenile bud 3	29.423
	CRR073306	Third green 1	5.965
	CRR073307	Third green 2	4.974
	CRR073308	Third green 3	8.639
	CRR073309	Second white 1	7.969
	CRR073310	Second white 2	7.952
	CRR073311	Second white 3	11.657
	CRR073312	Silver flowering 1	11.086
	CRR073313	Silver flowering 2	10.772
	CRR073314	Silver flowering 3	8.043
	CRR073315	Gold flowering 1	10.154
	CRR073316	Gold flowering 2	16.169
	CRR073317	Gold flowering 3	16.101
	CRR073318	Tawny withering 1	17.809
	CRR073319	Tawny withering 2	13.380
	CRR073320	Tawny withering 3	17.112