Gene detail

Detail information of GWHGAAZE017998

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_006351438.1	0	PREDICTED: protein tipD-like isoform X1 [Solanum tuberosum]
Swissprot	tr\|Q8W1K8\|MUT11_CHLRE	7E-23	Protein Mut11
trEMBL	tr\|M1B7X3\|M1B7X3_SOLTU	0	Uncharacterized protein {ECO:0000313\|EnsemblPlants:PGSC0003DMT400039207}
TAIR10	AT5G50230.1	0	Transducin/WD40 repeat-like superfamily protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000005	gene	13365002	13369424	+
GWHAAZE00000005	mRNA	13365002	13369424	+
GWHAAZE00000005	exon	13365002	13365033	+
GWHAAZE00000005	exon	13365154	13365280	+
GWHAAZE00000005	exon	13366521	13366702	+
GWHAAZE00000005	exon	13366801	13366996	+
GWHAAZE00000005	exon	13368402	13369424	+
GWHAAZE00000005	CDS	13365002	13365033	+
GWHAAZE00000005	CDS	13365154	13365280	+
GWHAAZE00000005	CDS	13366521	13366702	+
GWHAAZE00000005	CDS	13366801	13366996	+
GWHAAZE00000005	CDS	13368402	13369424	+

Transcript Sequence
>GWHTAAZE018020 ATGGCTCGCGCAAATCTGCAGTTCGATTATCGGTTAAAAGAGCAAATTGGAATGGAAGCAATCAATCACGCTCTGAAGGCTCTTCGGAAGCGGCATAAATCGGAAGAGGGCGCTCATGGCCCTGCGATCATAGCTCTTTCTAGGCCTTTTTGTTATCAGGGTTCAGAATGGAAAGAGAAAGCAGAAACTCTCGAACTGGAACTTCAGCAATGCTATAAAGCTCAAGCTCGTTTATCTGAGCAGCTTGTTGTGGAAGTGGCCGAGTCAAGAGGTTCAAAGGCTTTAGTTGAAGAGAAAGAAGCCTTAATCACTGATTTGCAAAAGGAGTGTAGTCAAGCAAGGGATGAATACTCTCATTTAAAGGTTCTTGTGGAAGAAAAGACGAAAGCTATAGAGTTGCTCATAGGTGAGAACGAGGAACTGAAGGCACAACTTGAAGTGATGACTCTTAGAGCAAAAGATGCTGAGGCGGAAAATAAGATGCTAATTGATCGTTGGATGTTGCACAAGATGCAGGAGGCGGAACGACTTAATGAGGCTAATGCAATTTATGAGGATATGCTTGATCAGCTTAGGGCGAATAGTATAGGAAAACTCACCCGGAAACAAGTGGATGGTGTCGTCCGCCAAGGGGAAGAAGGTGCCAAGTACTATGTGGAGTCTACTATTCCCAGTACAAGCCAGTACAACATCCCTGCTCATGATGGCGGTTGTGCTTCTATTATGTTCGAGTACAATGCTGGTCTATTAGTTAGTGGGGGCCAGGACCAGACCATAAAAATGTGGAATACAAGCACCGGCTCACTAACTCGCACGCTTCATGGCTGTTTGGGCTCTGTTCTTGATCTCACAATCACCCACGATAACAGATCAATTATTGCTGCGTGCAGCTCCAACAACTTGTACGTTTGGGACGAGAATTCGGGCCGGATCCGCCACACTCTCACAGGCCACATAGACAAAGTCTCAGCCGTAGATGTCAACAGATTCTCGAGCCGCCATGTGGCAAGCGCCGCTTACGACCGTACTATAAAGATTTGGGATCTGCAGAGAGGTTACTGCTCCAACACAATTATCTTCCATAGCAATTGTAACACGCTTTGTTTCAGCGTAGATGGATTGACGATTTGTTCGGGTCACAATGATGGTAATCTTCGGCTATGGGATATTCAAACAGGAAAGCTAGTTAGTGAAGTCGCTGCTCATTCAAGCACTATTACATCAATATCTCTGTCCAGAGATGGAAATACGATTCTGACGAGTGGGAGAGATAATGTGCACAATTTACTTGATGCGCGAAGTCTTGAAGTTTGTAGTACGTTTAGAGCGAGTGGGAACAGAGTGGCGTCAAATTGGAGCCGATCGTGTATTAGTGCGGATGGTAATTACGTTGCTGCTGGATCGATTGACGGGTCAGTTTATGTTTGGTCAACTTTGAAGGTGAGTGTAGTGAGCACTCTAAAGGAACATGAGGGTCCTGTTCTATGTTGTTCATGGAGTGATATTGGGAAGCCATTAGCTACGTCGGACAGGAATGGAGTTATATGTACATGGACATGA

Network for GWHGAAZE017998

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF08614.12	ATG16	57	178	8.60E-16
PF00400.33	WD40	233	263	0.089
PF00400.33	WD40	311	348	2.90E-05
PF12894.8	ANAPC4_WD40	362	409	5.30E-05
PF00400.33	WD40	456	477	0.018

Protein Sequence

Gene family

Gene family	subfamily
Ubiquitin Family	DWD

KEGG pathway

KO	Enzyme	pathway	mapID
K17890	ATG16L1	Autophagy - animal	map04140
		Autophagy - yeast	map04138
		Autophagy - other	map04136
		NOD-like receptor signaling pathway	map04621

Gene Ontology

GO term	Ontology	Name
GO:0005515	molecular_function	protein binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	4.568
	SRR3591706	second leaf	1.813
	SRR3591707	mature leaf	3.764
	SRR3591708	Shoot apex	5.180
	SRR3591709	Stem	6.630
	SRR3591710	White floral bud	6.195
	SRR3591711	White flower	13.784
	SRR3591712	Green floral bud	6.097
	SRR3591713	Yellow flower	8.902
SRP173429	SRR8316895	Juvenile bud stage	3.059
	SRR8316896	Juvenile bud stage	5.726
	SRR8316897	Juvenile bud stage	1.605
	SRR8316894	Third green stage	1.907
	SRR8316900	Third green stage	5.492
	SRR8316901	Third green stage	5.370
	SRR8316898	Complete white stage	0.948
	SRR8316899	Complete white stage	5.056
	SRR8316903	Complete white stage	2.472
	SRR8316902	Silver flowering stage	2.391
	SRR8316904	Silver flowering stage	3.233
	SRR8316905	Silver flowering stage	0.877
	SRR8316906	Gold flowering stage	5.596
	SRR8316907	Gold flowering stage	4.892
	SRR8316908	Gold flowering stage	3.799
SRP132670	SRR6706286	Control	4.663
	SRR6706287	Light intensity 50%	4.617
	SRR6706288	Light intensity 20%	5.473
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	4.968
	CNS0095593	Slightly white alabastrum(diploid) 2	4.762
	CNS0095594	Slightly white alabastrum(diploid) 3	3.999
	CNS0095595	Whole white alabastrum(diploid) 2	3.398
	CNS0095596	Whole white alabastrum(diploid) 3	3.969
	CNS0095597	Whole white alabastrum(diploid) 4	2.799
	CNS0095598	Silvery flower (diploied) 1	4.263
	CNS0095599	Silvery flower (diploied) 2	3.788
	CNS0095600	Silvery flower (diploied) 3	5.989
	CNS0095601	Golden flower (diploid) 1	4.637
	CNS0095602	Golden flower (diploid) 2	5.557
	CNS0095603	Golden flower (diploid) 3	4.695
	CNS0095604	Slightly white alabastrum(tetraploid) 1	5.059
	CNS0095605	Slightly white alabastrum(tetraploid) 2	4.575
	CNS0095606	Slightly white alabastrum(tetraploid) 3	9.195
	CNS0095607	Whole white alabastrum(tetraploid) 1	4.031
	CNS0095608	Whole white alabastrum(tetraploid) 2	3.636
	CNS0095609	Whole white alabastrum(tetraploid) 3	5.824
	CNS0095610	Silvery flower (tetraploid) 1	8.083
	CNS0095611	Silvery flower (tetraploid) 2	7.132
	CNS0095612	Silvery flower (tetraploid) 3	5.802
	CNS0095613	Golden flower (tetraploid) 1	6.536
	CNS0095614	Golden flower (tetraploid) 2	8.510
	CNS0095615	Golden flower (tetraploid) 3	8.083
CRA001975	CRR073297	Stem 1	6.664
	CRR073298	Stem 2	5.881
	CRR073299	Stem 3	5.077
	CRR073300	Leaf 1	5.722
	CRR073301	Leaf 2	5.599
	CRR073302	Leaf 3	3.817
	CRR073303	Juvenile bud 1	4.280
	CRR073304	Juvenile bud 2	2.219
	CRR073305	Juvenile bud 3	3.484
	CRR073306	Third green 1	0.826
	CRR073307	Third green 2	1.126
	CRR073308	Third green 3	1.105
	CRR073309	Second white 1	1.054
	CRR073310	Second white 2	1.367
	CRR073311	Second white 3	1.759
	CRR073312	Silver flowering 1	0.965
	CRR073313	Silver flowering 2	1.667
	CRR073314	Silver flowering 3	0.845
	CRR073315	Gold flowering 1	3.130
	CRR073316	Gold flowering 2	4.067
	CRR073317	Gold flowering 3	1.915
	CRR073318	Tawny withering 1	3.783
	CRR073319	Tawny withering 2	4.517
	CRR073320	Tawny withering 3	3.657