Gene detail

Detail information of GWHGAAZE017980

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_002276830.3	1.2829E-118	PREDICTED: lysM domain receptor-like kinase 4 [Vitis vinifera]
Swissprot	tr\|D7UPN3\|CERK1_ORYSJ	4E-50	Chitin elicitor receptor kinase 1 (Precursor)
trEMBL	tr\|A0A061G5H7\|A0A061G5H7_THECC	1E-113	Kinase family protein / peptidoglycan-binding LysM domain-containing protein, putative {ECO:0000313\|EMBL:EOY22274.1}
TAIR10	AT2G33580.1	9E-43	Protein kinase superfamily protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000005	gene	13128928	13129677	+
GWHAAZE00000005	mRNA	13128928	13129677	+
GWHAAZE00000005	exon	13128928	13129677	+
GWHAAZE00000005	CDS	13128928	13129677	+

Transcript Sequence
>GWHTAAZE018002 ATGAACTCAACATTAGCAGCCCACCACGTGGTCGAGATATTAACAAAGATTAATCATCTAAATGTGGCGAGGCTGGAGGGCTGTTGTTATGCAGACGAGTGTCCATACCTTGTTTTCGAGTTTGCAGAGAATGGAAGCTTAAGGGACTGTTTGTCCAACCCGAAAACGGCCAAGATTTTCACTTGGGCAAAAAGACTGCAGATCGCTTTTGATCTTGCAGTAGGGCTTCATTACATACATTACTGCACAAATCCTACTTATGTCCATAGGAACATAAACAGCAGAAATGTGCTTATGACCAAGGATTGGAGGGCCAAGATTTCGGGTTTTAGAATGGCGAGGCCGTTAATTTGCAGCGAAGAGAAAGGAGGTAATAGTTGGAATGAATCTGTAATAGTGGGTAAGAAGGGGTATTTGGCACCCGAATACCTCAACTTTGGCCAGGCGTCTATTAAGATAGATGTATTCGCGTTTGGGGTTGTTTTACTCGAGTTGTTATCAGCTAAAGAGGCGATCACAGAAGAGAAATTTCTTAAAGATTGCGTCAAGTTTTTAGCGGGCAGAGGGTTTGAAGATTCTTCAAGCTGCTTGGAGAAGTTCAAGGGATTCATGGACCCTAATTTGGAAGGGGATTACCCTTTGGGTGATGCTATGTGTTTAGCACTCTTAGCTAAAGGTTGTGTAGAGGAAGAACCCCTTCATAGGCCTACTATGAACGATGTTCTCAAGGCTCTTTCAAGAATATTGTGA

Network for GWHGAAZE017980

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF07714.18	PK_Tyr_Ser-Thr	10	239	7.30E-30

Protein Sequence

Gene family

Gene family	subfamily
Protein Kinases Family	RLK-Pelle_LysM

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0006468	biological_process	protein phosphorylation
GO:0004672	molecular_function	protein kinase activity
GO:0005524	molecular_function	ATP binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	0.000
	SRR3591706	second leaf	0.000
	SRR3591707	mature leaf	0.000
	SRR3591708	Shoot apex	0.365
	SRR3591709	Stem	0.000
	SRR3591710	White floral bud	1.039
	SRR3591711	White flower	0.198
	SRR3591712	Green floral bud	0.145
	SRR3591713	Yellow flower	0.106
SRP173429	SRR8316895	Juvenile bud stage	0.520
	SRR8316896	Juvenile bud stage	0.441
	SRR8316897	Juvenile bud stage	0.049
	SRR8316894	Third green stage	0.120
	SRR8316900	Third green stage	0.000
	SRR8316901	Third green stage	0.291
	SRR8316898	Complete white stage	0.000
	SRR8316899	Complete white stage	0.865
	SRR8316903	Complete white stage	0.498
	SRR8316902	Silver flowering stage	0.000
	SRR8316904	Silver flowering stage	0.000
	SRR8316905	Silver flowering stage	0.000
	SRR8316906	Gold flowering stage	0.000
	SRR8316907	Gold flowering stage	0.000
	SRR8316908	Gold flowering stage	0.000
SRP132670	SRR6706286	Control	0.267
	SRR6706287	Light intensity 50%	0.318
	SRR6706288	Light intensity 20%	0.330
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	1.187
	CNS0095593	Slightly white alabastrum(diploid) 2	0.618
	CNS0095594	Slightly white alabastrum(diploid) 3	0.888
	CNS0095595	Whole white alabastrum(diploid) 2	0.729
	CNS0095596	Whole white alabastrum(diploid) 3	0.432
	CNS0095597	Whole white alabastrum(diploid) 4	0.657
	CNS0095598	Silvery flower (diploied) 1	0.622
	CNS0095599	Silvery flower (diploied) 2	0.120
	CNS0095600	Silvery flower (diploied) 3	0.320
	CNS0095601	Golden flower (diploid) 1	0.361
	CNS0095602	Golden flower (diploid) 2	0.474
	CNS0095603	Golden flower (diploid) 3	0.999
	CNS0095604	Slightly white alabastrum(tetraploid) 1	2.124
	CNS0095605	Slightly white alabastrum(tetraploid) 2	0.741
	CNS0095606	Slightly white alabastrum(tetraploid) 3	2.057
	CNS0095607	Whole white alabastrum(tetraploid) 1	1.143
	CNS0095608	Whole white alabastrum(tetraploid) 2	0.000
	CNS0095609	Whole white alabastrum(tetraploid) 3	0.086
	CNS0095610	Silvery flower (tetraploid) 1	0.000
	CNS0095611	Silvery flower (tetraploid) 2	0.202
	CNS0095612	Silvery flower (tetraploid) 3	0.000
	CNS0095613	Golden flower (tetraploid) 1	0.000
	CNS0095614	Golden flower (tetraploid) 2	0.000
	CNS0095615	Golden flower (tetraploid) 3	0.000
CRA001975	CRR073297	Stem 1	0.466
	CRR073298	Stem 2	0.408
	CRR073299	Stem 3	0.077
	CRR073300	Leaf 1	0.219
	CRR073301	Leaf 2	0.287
	CRR073302	Leaf 3	0.042
	CRR073303	Juvenile bud 1	0.178
	CRR073304	Juvenile bud 2	0.035
	CRR073305	Juvenile bud 3	0.061
	CRR073306	Third green 1	0.000
	CRR073307	Third green 2	0.000
	CRR073308	Third green 3	0.000
	CRR073309	Second white 1	0.000
	CRR073310	Second white 2	0.000
	CRR073311	Second white 3	0.000
	CRR073312	Silver flowering 1	0.000
	CRR073313	Silver flowering 2	0.000
	CRR073314	Silver flowering 3	0.000
	CRR073315	Gold flowering 1	0.000
	CRR073316	Gold flowering 2	0.545
	CRR073317	Gold flowering 3	0.000
	CRR073318	Tawny withering 1	0.000
	CRR073319	Tawny withering 2	0.000
	CRR073320	Tawny withering 3	0.373